Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30596
(800 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_22016| Best HMM Match : HSP90 (HMM E-Value=0) 167 9e-42
SB_50934| Best HMM Match : HSP90 (HMM E-Value=0) 111 6e-25
SB_87| Best HMM Match : HSP90 (HMM E-Value=9.4e-10) 64 1e-10
SB_40159| Best HMM Match : No HMM Matches (HMM E-Value=.) 37 0.017
SB_23388| Best HMM Match : ParBc (HMM E-Value=0.3) 32 0.47
SB_16367| Best HMM Match : TPR_1 (HMM E-Value=0) 32 0.62
SB_45596| Best HMM Match : rve (HMM E-Value=1.8e-07) 31 1.1
SB_21540| Best HMM Match : fn3 (HMM E-Value=4.3e-30) 31 1.4
SB_24813| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.5
SB_15342| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.5
SB_5128| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.4
SB_47057| Best HMM Match : Merozoite_SPAM (HMM E-Value=0.94) 29 5.8
SB_24812| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.8
SB_36131| Best HMM Match : His_leader (HMM E-Value=2.7e-10) 29 5.8
SB_29236| Best HMM Match : TMS_TDE (HMM E-Value=0) 28 7.7
SB_14816| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.7
>SB_22016| Best HMM Match : HSP90 (HMM E-Value=0)
Length = 581
Score = 167 bits (406), Expect = 9e-42
Identities = 78/87 (89%), Positives = 84/87 (96%)
Frame = +3
Query: 6 LAVKHFSVEGQLEFRALLFVPRRAPFDLFENKKRKNNIKLYVRRVFIMDNCEDLIPEYLN 185
LAVKHFSVEGQLEFRALLFVP+RAPFDLFE++K++NNIKLYVRRVFIMDNCEDLIPEYL
Sbjct: 255 LAVKHFSVEGQLEFRALLFVPKRAPFDLFESRKKRNNIKLYVRRVFIMDNCEDLIPEYLG 314
Query: 186 FIRGVVDSEDLPLNISREMLQQNKF*K 266
FI+GVVDSEDLPLNISREMLQQNK K
Sbjct: 315 FIKGVVDSEDLPLNISREMLQQNKILK 341
Score = 147 bits (356), Expect = 1e-35
Identities = 67/84 (79%), Positives = 78/84 (92%)
Frame = +2
Query: 257 ILKVIRKNLVKKCLELFEELAEDKENYKKYYEQFSKNLKLGIHEDSQNRAKLSELLRYHT 436
ILKVIRKNLVKKC+ELF E+AED++NYKK+YEQF KNLKLGIHEDS NRAKL++LLRYH+
Sbjct: 339 ILKVIRKNLVKKCMELFNEIAEDQDNYKKFYEQFGKNLKLGIHEDSVNRAKLADLLRYHS 398
Query: 437 SASGDEACSLKEYVSRMKENQKHI 508
S+SGDE SLK+YV+RMKENQK I
Sbjct: 399 SSSGDELTSLKDYVTRMKENQKDI 422
Score = 82.2 bits (194), Expect = 4e-16
Identities = 37/66 (56%), Positives = 50/66 (75%)
Frame = +1
Query: 460 LSQRVCIQDEGEPETYHYITGENRDQVANSSFVERVKKRGYEVVYMTEPIDEYVVPQMRE 639
L V E + + Y +ITGE++DQV++S+FVERVK RG+EV+YM EPIDEY + Q++E
Sbjct: 408 LKDYVTRMKENQKDIY-FITGESKDQVSHSAFVERVKSRGFEVLYMVEPIDEYAIQQLKE 466
Query: 640 YDGKTL 657
YDGK L
Sbjct: 467 YDGKKL 472
>SB_50934| Best HMM Match : HSP90 (HMM E-Value=0)
Length = 855
Score = 111 bits (267), Expect = 6e-25
Identities = 55/103 (53%), Positives = 79/103 (76%), Gaps = 1/103 (0%)
Frame = +3
Query: 6 LAVKHFSVEGQLEFRALLFVPRRAPFDLFENK-KRKNNIKLYVRRVFIMDNCEDLIPEYL 182
LA HF EG++ FR++LFVP+ AP +LF + K+ + IKL+VRRVFI DN E+++P+YL
Sbjct: 355 LAKIHFVAEGEVTFRSILFVPKAAPSNLFSDYGKKMDAIKLFVRRVFITDNFEEMMPKYL 414
Query: 183 NFIRGVVDSEDLPLNISREMLQQNKF*K*LGRI*LKNA*NYLK 311
+FIRGVVDS+DLPLN+SRE LQQ+K K + + ++ A + +K
Sbjct: 415 SFIRGVVDSDDLPLNVSREQLQQHKLLKVIKKKLVRKALDMIK 457
Score = 76.2 bits (179), Expect = 3e-14
Identities = 36/82 (43%), Positives = 60/82 (73%), Gaps = 1/82 (1%)
Frame = +2
Query: 257 ILKVIRKNLVKKCLELFEELAEDKENYKK-YYEQFSKNLKLGIHEDSQNRAKLSELLRYH 433
+LKVI+K LV+K L++ +++ KE+Y +++++S N+KLG+ ED NR +L++LLR++
Sbjct: 440 LLKVIKKKLVRKALDMIKKIP--KEDYMATFWKEYSTNIKLGVIEDHSNRTRLAKLLRFY 497
Query: 434 TSASGDEACSLKEYVSRMKENQ 499
+S S + SL EY+ RMKE Q
Sbjct: 498 SSNSEKDMTSLAEYIERMKEKQ 519
Score = 59.3 bits (137), Expect = 4e-09
Identities = 22/51 (43%), Positives = 37/51 (72%)
Frame = +1
Query: 499 ETYHYITGENRDQVANSSFVERVKKRGYEVVYMTEPIDEYVVPQMREYDGK 651
+ +++ G NR +V +S FVE++ K GYEV+Y+ EP+DEY + + E++GK
Sbjct: 520 DVIYFMAGHNRKEVESSPFVEKLLKEGYEVLYLIEPVDEYCMQSLPEFEGK 570
>SB_87| Best HMM Match : HSP90 (HMM E-Value=9.4e-10)
Length = 739
Score = 64.1 bits (149), Expect = 1e-10
Identities = 28/72 (38%), Positives = 43/72 (59%)
Frame = +3
Query: 18 HFSVEGQLEFRALLFVPRRAPFDLFENKKRKNNIKLYVRRVFIMDNCEDLIPEYLNFIRG 197
H+ + L R++ + P P +F ++ ++ I LY RRV I E ++P+ FIR
Sbjct: 308 HYKTDAPLNIRSIFYFPETLP-QMFNMQQMESGISLYSRRVLIQAKAEKMLPQRFRFIRS 366
Query: 198 VVDSEDLPLNIS 233
VVDSED+PLN+S
Sbjct: 367 VVDSEDIPLNLS 378
Score = 50.8 bits (116), Expect = 1e-06
Identities = 22/39 (56%), Positives = 30/39 (76%)
Frame = +3
Query: 165 LIPEYLNFIRGVVDSEDLPLNISREMLQQNKF*K*LGRI 281
++P +L FIRGVVDSED+PLN+SRE+LQ + K L +
Sbjct: 399 VLPRWLRFIRGVVDSEDIPLNLSRELLQDSALIKKLSNV 437
>SB_40159| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1497
Score = 37.1 bits (82), Expect = 0.017
Identities = 27/75 (36%), Positives = 37/75 (49%)
Frame = +2
Query: 263 KVIRKNLVKKCLELFEELAEDKENYKKYYEQFSKNLKLGIHEDSQNRAKLSELLRYHTSA 442
KV+R N + + +EL DK+N K QF+ NL + S+ A L EL H A
Sbjct: 16 KVVRSNCTRN-INKIKELLPDKKNKSKV-RQFANNLDEVRGKASELTADLEELDPEHIEA 73
Query: 443 SGDEACSLKEYVSRM 487
GD L+E VS +
Sbjct: 74 DGDWLQDLEEAVSEI 88
>SB_23388| Best HMM Match : ParBc (HMM E-Value=0.3)
Length = 1168
Score = 32.3 bits (70), Expect = 0.47
Identities = 21/91 (23%), Positives = 48/91 (52%), Gaps = 2/91 (2%)
Frame = +2
Query: 260 LKVIRKNLVKKCLELFEELAEDKENYKKYYEQFSKNLKLGIHEDSQNRAKLSEL--LRYH 433
++ +R + K+ ++ +E+ E++E KK+YE+ + + + K+SE L +H
Sbjct: 14 IEELRFEMAKRNTQM-QEIEEERETLKKFYEEEKNFAREKLEATKRLSEKVSEFESLAHH 72
Query: 434 TSASGDEACSLKEYVSRMKENQKHITTSLEK 526
+E SLKE+ ++ ++ Q+ + E+
Sbjct: 73 KE---EEINSLKEFKTKSEKAQQELHEKSER 100
>SB_16367| Best HMM Match : TPR_1 (HMM E-Value=0)
Length = 635
Score = 31.9 bits (69), Expect = 0.62
Identities = 20/76 (26%), Positives = 34/76 (44%)
Frame = +2
Query: 278 NLVKKCLELFEELAEDKENYKKYYEQFSKNLKLGIHEDSQNRAKLSELLRYHTSASGDEA 457
N + L LF++ ++ K Y + G +ED+ N + + L T GDE+
Sbjct: 399 NNYQHALSLFQKTGDESCQAKAYLSMGKVHFNQGKYEDALNNYQHALSLFRKT---GDES 455
Query: 458 CSLKEYVSRMKENQKH 505
C K Y+ K ++ H
Sbjct: 456 CQAKSYLGMGKVHRSH 471
>SB_45596| Best HMM Match : rve (HMM E-Value=1.8e-07)
Length = 882
Score = 31.1 bits (67), Expect = 1.1
Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Frame = +2
Query: 347 YEQFSKNLKLGIHE-DSQNRAKLSELLRYHTSASGDEACSLKEYVSR 484
Y +F KN ++ + S N KLS L++Y T + L EY SR
Sbjct: 396 YPRFIKNFEVNVKAMSSDNNTKLSYLIQYCTGNAKGGYSELSEYASR 442
>SB_21540| Best HMM Match : fn3 (HMM E-Value=4.3e-30)
Length = 634
Score = 30.7 bits (66), Expect = 1.4
Identities = 19/59 (32%), Positives = 25/59 (42%), Gaps = 1/59 (1%)
Frame = +2
Query: 377 GIHEDSQNRAKLSELLRYHTSASGDEACSLKEYV-SRMKENQKHITTSLEKTETRWRTP 550
GIH+ + R K +E LR + S CSL V ++ N K S K W P
Sbjct: 172 GIHQKCRKRLKYAECLRVYAPLSYSVTCSLTFLVFCKIPTNVKLDPKSYNKLRISWTQP 230
>SB_24813| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1218
Score = 29.9 bits (64), Expect = 2.5
Identities = 25/94 (26%), Positives = 49/94 (52%), Gaps = 1/94 (1%)
Frame = +2
Query: 260 LKVIRKNLVKKCLELFEELAEDKENYKKYYE-QFSKNLKLGIHEDSQNRAKLSELLRYHT 436
+K ++KN K+ E+ +E A +KEN + E +FS+ +K S+N A L E +++
Sbjct: 331 IKELQKNFAKEKQEIEDEYAHEKENIRAELENEFSEKIK------SENEA-LEETVKH-- 381
Query: 437 SASGDEACSLKEYVSRMKENQKHITTSLEKTETR 538
L+ ++ +KE +K + T ++ E +
Sbjct: 382 ---------LQGEINYLKEQKKELETKVQSLELK 406
>SB_15342| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1434
Score = 29.9 bits (64), Expect = 2.5
Identities = 19/63 (30%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
Frame = +2
Query: 374 LGIHEDSQNRAKLSELLRYHTSASGDEACSL-KEYVSRMKENQKHITTSLEKTETRWRTP 550
L E ++ R ++ E LR + S E + K + ++KE+Q E+ R TP
Sbjct: 1332 LSDEEMAKLRKQIEEDLRASMANSAKEMEDMNKNWEDKVKESQLESRDKEEEKRKRQATP 1391
Query: 551 HLW 559
HLW
Sbjct: 1392 HLW 1394
>SB_5128| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2102
Score = 29.1 bits (62), Expect = 4.4
Identities = 16/53 (30%), Positives = 23/53 (43%)
Frame = +1
Query: 478 IQDEGEPETYHYITGENRDQVANSSFVERVKKRGYEVVYMTEPIDEYVVPQMR 636
I +G ++G VAN S+ +R R Y V + PID V +R
Sbjct: 1047 IHYDGYENLLSLVSGTKEVLVANYSYTDRFYHRNYTTVNIEAPIDPEAVDLLR 1099
>SB_47057| Best HMM Match : Merozoite_SPAM (HMM E-Value=0.94)
Length = 969
Score = 28.7 bits (61), Expect = 5.8
Identities = 15/52 (28%), Positives = 24/52 (46%), Gaps = 2/52 (3%)
Frame = +1
Query: 475 CIQDEGEPETYHYITGENRDQVANS--SFVERVKKRGYEVVYMTEPIDEYVV 624
C DE E H G +++ + S + K+ G +V+Y T +DE V
Sbjct: 175 CEVDESTVECQHVRGGREHGRMSGTYHSLIPVTKREGVDVIYSTYEVDESTV 226
>SB_24812| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1384
Score = 28.7 bits (61), Expect = 5.8
Identities = 26/90 (28%), Positives = 46/90 (51%), Gaps = 5/90 (5%)
Frame = +2
Query: 299 ELFEE-LAEDKENYKKYYEQFSKNLKLGIHEDSQNRAKLSELLRYHTSASGDEACSLKEY 475
E FE+ L E K + YEQ +NL+L + +SQ R K+ E ++Y + ++
Sbjct: 449 EEFEKILNEHKRKLDQDYEQEKENLRLNV--ESQ-RKKIEEDIKYERQKLKEGNDRERDE 505
Query: 476 VSRMK---ENQKH-ITTSLEKTETRWRTPH 553
+SR K +N+K+ ++ E + + T H
Sbjct: 506 ISREKKEVDNEKYRVSKVKEAVGSSYHTGH 535
>SB_36131| Best HMM Match : His_leader (HMM E-Value=2.7e-10)
Length = 416
Score = 28.7 bits (61), Expect = 5.8
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = -2
Query: 646 HHTPSSVVLHIHQWAQSCRLLHSHVSSLS 560
HH SS+++H H + S ++H H S S
Sbjct: 42 HHPSSSIIIHHHHPSSSIIIIHHHHPSSS 70
>SB_29236| Best HMM Match : TMS_TDE (HMM E-Value=0)
Length = 834
Score = 28.3 bits (60), Expect = 7.7
Identities = 15/40 (37%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Frame = +1
Query: 4 YLQS-NTSPLKVS*SSEHYFLCHVVHLLTCLKTRSARTIS 120
YLQS +T P+ + S + LC + ++TC +TR A + S
Sbjct: 105 YLQSRDTCPVHLVLISVNLLLCITILMVTCARTRQAGSTS 144
>SB_14816| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3760
Score = 28.3 bits (60), Expect = 7.7
Identities = 20/87 (22%), Positives = 37/87 (42%)
Frame = +2
Query: 272 RKNLVKKCLELFEELAEDKENYKKYYEQFSKNLKLGIHEDSQNRAKLSELLRYHTSASGD 451
R + + LEL + + DKE + L+ + + K+ EL R +
Sbjct: 2749 RDDFEDELLELKKNVKLDKEGTDLQINTLKEKLEATEKAQAPLQTKIKELERKTIQLLRE 2808
Query: 452 EACSLKEYVSRMKENQKHITTSLEKTE 532
S +E+ ++ E++K + LEK E
Sbjct: 2809 RRDSKREFEGKLSESEKERSPLLEKIE 2835
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,101,225
Number of Sequences: 59808
Number of extensions: 445065
Number of successful extensions: 1453
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1317
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1449
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2215746665
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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