Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30596
         (800 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    25   1.1  
AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein...    25   1.1  
AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein...    25   1.1  
AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.                24   1.4  

>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 24.6 bits (51), Expect = 1.1
 Identities = 11/33 (33%), Positives = 20/33 (60%)
 Frame = -1

Query: 209 TVDNTSNEVKVLWDEILTVVHDENSSYIQLDIV 111
           ++ +T++E+   WD  + +V DEN    QL +V
Sbjct: 183 SLSHTTDEMIFQWDPDVPLVVDENIELPQLQLV 215


>AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 24.6 bits (51), Expect = 1.1
 Identities = 14/88 (15%), Positives = 37/88 (42%)
 Frame = +2

Query: 263 KVIRKNLVKKCLELFEELAEDKENYKKYYEQFSKNLKLGIHEDSQNRAKLSELLRYHTSA 442
           + +RK+L   C E    + + ++  +  Y ++ K L +G+  ++    +     R  +  
Sbjct: 136 RTVRKDLSYACREEKSCIIDKRQRNRCQYCRYQKCLAMGMKREAVQEERQRTKERDQSEV 195

Query: 443 SGDEACSLKEYVSRMKENQKHITTSLEK 526
               +      + R+ E +K +   +E+
Sbjct: 196 ESTSSLHSDMPIERILEAEKRVECKMEQ 223


>AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 24.6 bits (51), Expect = 1.1
 Identities = 14/88 (15%), Positives = 37/88 (42%)
 Frame = +2

Query: 263 KVIRKNLVKKCLELFEELAEDKENYKKYYEQFSKNLKLGIHEDSQNRAKLSELLRYHTSA 442
           + +RK+L   C E    + + ++  +  Y ++ K L +G+  ++    +     R  +  
Sbjct: 136 RTVRKDLSYACREEKSCIIDKRQRNRCQYCRYQKCLAMGMKREAVQEERQRTKERDQSEV 195

Query: 443 SGDEACSLKEYVSRMKENQKHITTSLEK 526
               +      + R+ E +K +   +E+
Sbjct: 196 ESTSSLHSDMPIERILEAEKRVECKMEQ 223


>AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.
          Length = 316

 Score = 24.2 bits (50), Expect = 1.4
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = +3

Query: 405 LSSLSFCGTTLQHRVMKPALSKS 473
           L ++  CGTTLQ+R+ +  L K+
Sbjct: 133 LITMELCGTTLQNRLDEAILIKN 155


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 205,429
Number of Sequences: 438
Number of extensions: 4151
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25367793
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)