Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30595
(739 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC8E11.02c |rad24||14-3-3 protein Rad24|Schizosaccharomyces po... 153 3e-38
SPAC17A2.13c |rad25||14-3-3 protein Rad25|Schizosaccharomyces po... 146 4e-36
SPACUNK4.14 |mdb1||BRCT domain protein|Schizosaccharomyces pombe... 27 2.8
SPBC887.09c |||leucine-rich repeat protein Sog2 |Schizosaccharom... 27 2.8
SPBC1604.12 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 27 3.7
SPCC1739.15 |wtf21|SPCC1739.15, SPCC1739.15|wtf element Wtf21|Sc... 26 4.9
SPAC14C4.02c |smc5|spr18|Smc5-6 complex SMC subunit Smc5 |Schizo... 26 4.9
SPBC16A3.17c |||membrane transporter|Schizosaccharomyces pombe|c... 26 4.9
SPBC29B5.04c |||conserved fungal protein|Schizosaccharomyces pom... 26 6.4
SPAC11D3.06 |||MatE family transporter|Schizosaccharomyces pombe... 26 6.4
SPBC18H10.03 |tif35||translation initiation factor eIF3g|Schizos... 25 8.5
>SPAC8E11.02c |rad24||14-3-3 protein Rad24|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 270
Score = 153 bits (371), Expect = 3e-38
Identities = 74/106 (69%), Positives = 80/106 (75%)
Frame = +2
Query: 218 PQLTDRRIKSFLYKMKGDYHRYLAEFATGNDRKEAAENSLVAYKAASDIAMTELHPTHPI 397
P K F YKMKGDY+RYLAEFA G R+ +A+ SL YKAAS+IA EL PTHPI
Sbjct: 112 PNAASAESKVFYYKMKGDYYRYLAEFAVGEKRQHSADQSLEGYKAASEIATAELAPTHPI 171
Query: 398 RLGLALNFSVFYYEILNSPDRACRLAKAAFDERHRRTDTLSEESYK 535
RLGLALNFSVFYYEILNSPDRAC LAK AFDE D+LSEESYK
Sbjct: 172 RLGLALNFSVFYYEILNSPDRACYLAKQAFDEAISELDSLSEESYK 217
Score = 125 bits (301), Expect = 8e-30
Identities = 59/86 (68%), Positives = 73/86 (84%)
Frame = +3
Query: 3 TVEERNLLSVAYKNVIGARRASWRIISSIEQKEETKGAEDKLNMIRAYRSQVEKELRDIC 182
TVEERNLLSVAYKNVIGARRASWRI+SSIEQKEE+KG ++ +I+ YR ++E+EL IC
Sbjct: 40 TVEERNLLSVAYKNVIGARRASWRIVSSIEQKEESKGNTAQVELIKEYRQKIEQELDTIC 99
Query: 183 SDILGVLDKYLIPSSQTGESKVFYTK 260
DIL VL+K+LIP++ + ESKVFY K
Sbjct: 100 QDILTVLEKHLIPNAASAESKVFYYK 125
>SPAC17A2.13c |rad25||14-3-3 protein Rad25|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 270
Score = 146 bits (353), Expect = 4e-36
Identities = 72/106 (67%), Positives = 80/106 (75%)
Frame = +2
Query: 218 PQLTDRRIKSFLYKMKGDYHRYLAEFATGNDRKEAAENSLVAYKAASDIAMTELHPTHPI 397
P T K F YKMKGDY+RYLAEF G KEAA++SL AYKAASDIA+ EL PT P+
Sbjct: 111 PAATTGESKVFYYKMKGDYYRYLAEFTVGEVCKEAADSSLEAYKAASDIAVAELPPTDPM 170
Query: 398 RLGLALNFSVFYYEILNSPDRACRLAKAAFDERHRRTDTLSEESYK 535
RLGLALNFSVFYYEIL+SP+ AC LAK FDE D+LSEESYK
Sbjct: 171 RLGLALNFSVFYYEILDSPESACHLAKQVFDEAISELDSLSEESYK 216
Score = 127 bits (306), Expect = 2e-30
Identities = 59/86 (68%), Positives = 73/86 (84%)
Frame = +3
Query: 3 TVEERNLLSVAYKNVIGARRASWRIISSIEQKEETKGAEDKLNMIRAYRSQVEKELRDIC 182
+VEERNLLSVAYKN+IGARRASWRIISSIEQKEE++G + +I+ YR ++E EL DIC
Sbjct: 39 SVEERNLLSVAYKNIIGARRASWRIISSIEQKEESRGNTRQAALIKEYRKKIEDELSDIC 98
Query: 183 SDILGVLDKYLIPSSQTGESKVFYTK 260
D+L VL+K+LIP++ TGESKVFY K
Sbjct: 99 HDVLSVLEKHLIPAATTGESKVFYYK 124
>SPACUNK4.14 |mdb1||BRCT domain protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 520
Score = 27.1 bits (57), Expect = 2.8
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = -1
Query: 241 DSPVCELGMRYLSRTPRMSEQMSRSSFSTW 152
DSP +G R +S+ R + RSS S+W
Sbjct: 481 DSPTKVIGKRNVSKASRTGQGRKRSSRSSW 510
>SPBC887.09c |||leucine-rich repeat protein Sog2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 886
Score = 27.1 bits (57), Expect = 2.8
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = +1
Query: 493 TPSPN*HALGGELQGTPRSSCS 558
TPSP+ H+ G Q TP+S+ S
Sbjct: 244 TPSPHSHSPAGHQQSTPKSTLS 265
>SPBC1604.12 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 860
Score = 26.6 bits (56), Expect = 3.7
Identities = 14/55 (25%), Positives = 29/55 (52%)
Frame = +2
Query: 251 LYKMKGDYHRYLAEFATGNDRKEAAENSLVAYKAASDIAMTELHPTHPIRLGLAL 415
L+ K + R+L + + + E + Y+++S + +HPTHP+R+ + L
Sbjct: 768 LHLPKVNPERFLPTKSLKLEEMKPLEEKVPIYRSSSKQPL-RIHPTHPLRVTVCL 821
>SPCC1739.15 |wtf21|SPCC1739.15, SPCC1739.15|wtf element
Wtf21|Schizosaccharomyces pombe|chr 3|||Manual
Length = 329
Score = 26.2 bits (55), Expect = 4.9
Identities = 17/57 (29%), Positives = 27/57 (47%), Gaps = 5/57 (8%)
Frame = -1
Query: 556 CMMSVESLVALLRERVSSAMAFVEGGLGEP----AGAVRAVQD-LVVEHGEVERESE 401
C M + R + + +AF+ GG+G A A+R D + GE++ ESE
Sbjct: 272 CEMECPGALIRTRNSIRNGIAFILGGIGNAMMGLANAIRGANDNNDIPLGEMDVESE 328
>SPAC14C4.02c |smc5|spr18|Smc5-6 complex SMC subunit Smc5
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1065
Score = 26.2 bits (55), Expect = 4.9
Identities = 9/27 (33%), Positives = 19/27 (70%)
Frame = +3
Query: 129 NMIRAYRSQVEKELRDICSDILGVLDK 209
N +RA + +++K+L+D+ + +LDK
Sbjct: 243 NQLRADKKKLKKDLKDLVEEFQPILDK 269
>SPBC16A3.17c |||membrane transporter|Schizosaccharomyces pombe|chr
2|||Manual
Length = 599
Score = 26.2 bits (55), Expect = 4.9
Identities = 10/37 (27%), Positives = 22/37 (59%)
Frame = -1
Query: 196 PRMSEQMSRSSFSTWLRYALIMFNLSSAPFVSSFCSM 86
P ++E + +S S+W+ A ++ + + P V FC++
Sbjct: 121 PTIAEDFNDTSSSSWIGSAYVLASNAVLPAVGVFCNI 157
>SPBC29B5.04c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 605
Score = 25.8 bits (54), Expect = 6.4
Identities = 17/41 (41%), Positives = 21/41 (51%)
Frame = +3
Query: 168 LRDICSDILGVLDKYLIPSSQTGESKVFYTK*RATTTGTWP 290
+RD+ SD GVL K S+ E V TK AT+T P
Sbjct: 439 IRDVMSDFCGVLKKQTTKSNSLPE--VVQTKPFATSTPDTP 477
>SPAC11D3.06 |||MatE family transporter|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 455
Score = 25.8 bits (54), Expect = 6.4
Identities = 18/47 (38%), Positives = 22/47 (46%), Gaps = 2/47 (4%)
Frame = +2
Query: 350 AASDIAMT--ELHPTHPIRLGLALNFSVFYYEILNSPDRACRLAKAA 484
AA + MT +L T P LG+ + V YY PD A AK A
Sbjct: 265 AAQSVIMTTDQLLNTIPFGLGIITSNRVAYYLGAGLPDNASLTAKVA 311
>SPBC18H10.03 |tif35||translation initiation factor
eIF3g|Schizosaccharomyces pombe|chr 2|||Manual
Length = 282
Score = 25.4 bits (53), Expect = 8.5
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = +3
Query: 159 EKELRDICSDILGVLDKYLIPSSQTGESKVF 251
E+ELRD+ G+ YL +TG +K F
Sbjct: 215 EEELRDLFRRFGGIQRVYLAKDKETGRAKGF 245
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,451,096
Number of Sequences: 5004
Number of extensions: 45710
Number of successful extensions: 179
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 173
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 179
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 349251756
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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