Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30593
         (803 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.        25   0.53 
U14732-1|AAC46491.1|  322|Tribolium castaneum fushi-tarazu protein.    24   1.2  
DQ414247-1|ABD63009.2|  414|Tribolium castaneum paired protein.        23   3.8  
AY531877-1|AAT08872.1|  247|Tribolium castaneum ORF1p protein.         22   6.6  

>AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.
          Length = 556

 Score = 25.4 bits (53), Expect = 0.53
 Identities = 19/59 (32%), Positives = 26/59 (44%), Gaps = 3/59 (5%)
 Frame = +3

Query: 585 KKEKYVPSEQRKTDSEDSRRGCDSKP---SEPDPTKKGAPRDTFKSGLSGLRFEANIPH 752
           K++KY    Q     E+S +    +P   + P    K  PRD   S   G  FEA IP+
Sbjct: 354 KRQKYHDPSQLLRHVEESDKQRTHQPFLLNIPSEGIKVEPRDKAPSPYGGQMFEAPIPN 412


>U14732-1|AAC46491.1|  322|Tribolium castaneum fushi-tarazu protein.
          Length = 322

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 17/64 (26%), Positives = 29/64 (45%), Gaps = 1/64 (1%)
 Frame = +1

Query: 511 ITSRRIRS-ASNVQSNAKRVMTSLPQKKRNTFHLSSAKPIQKTVDEAVIQSHRSPTRQRR 687
           +T R+I+    N +  AK+      Q   +TF   S  P + ++++A       P  Q R
Sbjct: 222 LTERQIKIWFQNRRMKAKKDTKFTEQSVTSTFDFLSLHPAETSMNDANRNDCAKPLTQIR 281

Query: 688 VLRG 699
            +RG
Sbjct: 282 NIRG 285


>DQ414247-1|ABD63009.2|  414|Tribolium castaneum paired protein.
          Length = 414

 Score = 22.6 bits (46), Expect = 3.8
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = +3

Query: 609 EQRKTDSEDSRRGCDSKPSEPDPTKKGAPRDTF 707
           + + TD+E     CDS+P  P   K+   R TF
Sbjct: 196 KDKSTDNEGVS-DCDSEPGIPLKRKQRRSRTTF 227



 Score = 22.2 bits (45), Expect = 5.0
 Identities = 11/38 (28%), Positives = 16/38 (42%)
 Frame = +3

Query: 213 SPSTPLRRKSVLHLWPSIQQACTQDPTQPEDRNCLHSP 326
           S +TP     +  L+PS     +  P  P   N  H+P
Sbjct: 309 SVATPTPTSVMTELYPSPVPGHSTSPNLPLTHNIAHNP 346


>AY531877-1|AAT08872.1|  247|Tribolium castaneum ORF1p protein.
          Length = 247

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 9/28 (32%), Positives = 14/28 (50%)
 Frame = +1

Query: 499 HFNVITSRRIRSASNVQSNAKRVMTSLP 582
           HF    SRRI +++ +    K  +T  P
Sbjct: 124 HFAESQSRRILASAGINKTFKSTLTGTP 151


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 195,785
Number of Sequences: 336
Number of extensions: 4398
Number of successful extensions: 12
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 21895259
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)