Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30593
(803 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC622.18 |rpl6||60S ribosomal protein L6|Schizosaccharomyces p... 68 2e-12
SPBC725.17c |rrn11||RNA polymerase I transcription factor subuni... 27 2.4
SPBC336.06c |rnh1||ribonuclease H Rnh1|Schizosaccharomyces pombe... 27 4.1
SPBC1347.10 |cdc23|mcm10|MCM-associated protein Mcm10|Schizosacc... 26 5.5
SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces pomb... 26 7.2
SPBC18H10.12c |rpl701||60S ribosomal protein L7|Schizosaccharomy... 25 9.5
SPBC16D10.04c |dna2||DNA replication endonuclease-helicase Dna2|... 25 9.5
SPCC1919.10c |myo52||myosin type V|Schizosaccharomyces pombe|chr... 25 9.5
SPAC1142.03c |swi2|SPAC17G6.20c|Swi5 complex subunit Swi2|Schizo... 25 9.5
SPBC2G2.14 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 25 9.5
>SPCC622.18 |rpl6||60S ribosomal protein L6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 195
Score = 67.7 bits (158), Expect = 2e-12
Identities = 37/85 (43%), Positives = 52/85 (61%), Gaps = 1/85 (1%)
Frame = +1
Query: 283 RIRPNLKIGTVCILLAGRHAGKRVVLVGILPSGLLLVTGPFAFNSCPLRRIPQRYVIGTS 462
++R +L GTVCILLAGR GKRVV++ L L+VTGP+ N P+RR+ RYVI TS
Sbjct: 47 KLRASLAPGTVCILLAGRFRGKRVVVLSQL-EDTLVVTGPYKVNGVPIRRVNHRYVIATS 105
Query: 463 T-RISLGNFKLPKHFNVITSRRIRS 534
+I + + K +++ RS
Sbjct: 106 APKIDVSGVSVEKFTKAYFAKQKRS 130
>SPBC725.17c |rrn11||RNA polymerase I transcription factor subunit
Rrn11 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 200
Score = 27.5 bits (58), Expect = 2.4
Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Frame = -1
Query: 365 PTSTTLLPACLPARRMQTVPIFRLGRILRTCLL-NGRPQMKHGFS 234
P S+ + P LP+RR +T I L ++ CLL P+ FS
Sbjct: 21 PESSVIPPIPLPSRRYKTRHIDALCSLMHLCLLRKDYPRASRAFS 65
>SPBC336.06c |rnh1||ribonuclease H Rnh1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 264
Score = 26.6 bits (56), Expect = 4.1
Identities = 14/35 (40%), Positives = 23/35 (65%)
Frame = +1
Query: 526 IRSASNVQSNAKRVMTSLPQKKRNTFHLSSAKPIQ 630
IRS SN + K + T LP+ K+N F S+++P++
Sbjct: 188 IRSDSNY--SIKSLTTWLPKWKKNDFKTSNSQPVK 220
>SPBC1347.10 |cdc23|mcm10|MCM-associated protein
Mcm10|Schizosaccharomyces pombe|chr 2|||Manual
Length = 593
Score = 26.2 bits (55), Expect = 5.5
Identities = 20/56 (35%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Frame = +1
Query: 547 QSNAKRVMTSLPQKKRNTFHLSSAKPIQKTVDEAVIQSHRSPTRQRRVLR-GIPSK 711
+ +R + + +KKR L SA+ + + VIQ RSP +Q RVL PSK
Sbjct: 16 EKRLQRQLNEIQEKKR----LRSAQKEASSENAEVIQVPRSPPQQVRVLTVSSPSK 67
>SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1428
Score = 25.8 bits (54), Expect = 7.2
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = -3
Query: 105 PMNLYLAFLWNILDLEKRSHSVAQI 31
P+ L F+WN L+L +HSV I
Sbjct: 1268 PVLYTLDFIWNTLELNGLNHSVKDI 1292
>SPBC18H10.12c |rpl701||60S ribosomal protein L7|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 251
Score = 25.4 bits (53), Expect = 9.5
Identities = 10/34 (29%), Positives = 19/34 (55%)
Frame = +1
Query: 478 GNFKLPKHFNVITSRRIRSASNVQSNAKRVMTSL 579
GN+ +P ++ RIR +N+ A+++M L
Sbjct: 81 GNYYVPDETKLVFVIRIRGINNIPPKARKIMQLL 114
>SPBC16D10.04c |dna2||DNA replication endonuclease-helicase
Dna2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1398
Score = 25.4 bits (53), Expect = 9.5
Identities = 22/68 (32%), Positives = 36/68 (52%)
Frame = +1
Query: 412 NSCPLRRIPQRYVIGTSTRISLGNFKLPKHFNVITSRRIRSASNVQSNAKRVMTSLPQKK 591
NS P R+ Y++ T++ L NF +N T S+ + + K+ +SLP K+
Sbjct: 30 NSTPFRK---NYLLNGRTKLKLENFA----YNASTE-----ISSPKISEKK-HSSLPIKR 76
Query: 592 RNTFHLSS 615
+NTF+ SS
Sbjct: 77 KNTFNESS 84
>SPCC1919.10c |myo52||myosin type V|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1516
Score = 25.4 bits (53), Expect = 9.5
Identities = 15/53 (28%), Positives = 26/53 (49%)
Frame = +3
Query: 570 DIFATKKEKYVPSEQRKTDSEDSRRGCDSKPSEPDPTKKGAPRDTFKSGLSGL 728
D F ++ VPS R T+S + K ++P + G + F+SG++ L
Sbjct: 708 DEFVSRYYMLVPSAVRTTESLTFSKAILEKHADPTKYQIGKTKIFFRSGVTPL 760
>SPAC1142.03c |swi2|SPAC17G6.20c|Swi5 complex subunit
Swi2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 722
Score = 25.4 bits (53), Expect = 9.5
Identities = 13/44 (29%), Positives = 20/44 (45%)
Frame = +1
Query: 184 NQNSTPQT*EVLLPHSGENPCFICGRPFSKHVRRIRPNLKIGTV 315
N+N++ V P+S +N G S H I+PN T+
Sbjct: 465 NENNSKNRTNVTKPNSYKNSVLSIGNNHSNHSNIIKPNTYKNTI 508
>SPBC2G2.14 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 533
Score = 25.4 bits (53), Expect = 9.5
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = -3
Query: 732 TEVPKARF*RYPAEHPSLSGRA 667
T +PKAR+ + +HPSLS A
Sbjct: 461 TPIPKARWNQLANKHPSLSNSA 482
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,474,646
Number of Sequences: 5004
Number of extensions: 73431
Number of successful extensions: 203
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 196
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 202
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 390427050
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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