Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30593
(803 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_04_0433 - 22891261-22891509,22892181-22892301,22892405-228924... 82 6e-16
04_04_0211 - 23636377-23636532,23636624-23636805,23637853-236379... 79 5e-15
09_04_0560 - 18519024-18519145,18519330-18519435,18519671-185199... 31 1.4
08_02_0749 - 20769224-20770535,20770649-20771510,20771622-207732... 30 2.5
03_02_0674 - 10329933-10331537 30 2.5
02_02_0470 - 10700092-10700505 30 2.5
01_06_1169 - 35082160-35082292,35082572-35082651,35082727-350829... 29 3.3
04_04_0212 + 23646043-23646369,23646457-23647304,23647409-23649158 29 4.3
10_08_0951 - 21769342-21769752 29 5.7
04_01_0483 + 6343599-6343778,6343886-6344011,6344096-6344173,634... 29 5.7
05_03_0086 + 8279518-8280320,8280923-8281844 28 7.6
04_04_0396 + 24915880-24916222,24916318-24916577,24916689-249167... 28 7.6
09_06_0306 + 22186853-22187267,22187553-22187818,22187913-221880... 28 10.0
03_01_0261 - 2007522-2007590,2007684-2007926,2008008-2008106,200... 28 10.0
>02_04_0433 -
22891261-22891509,22892181-22892301,22892405-22892496,
22892692-22892755,22892855-22892920,22893102-22893193,
22893991-22894050,22894181-22894270,22894484-22894613,
22895066-22895157,22895299-22895373,22895663-22895754,
22896496-22896586,22897541-22897574,22897745-22897791,
22899110-22899209,22899300-22899436,22900837-22901015,
22901146-22901188,22901264-22901297,22901839-22901948,
22902043-22902224,22903062-22903168,22903266-22903480
Length = 833
Score = 81.8 bits (193), Expect = 6e-16
Identities = 38/72 (52%), Positives = 50/72 (69%)
Frame = +1
Query: 283 RIRPNLKIGTVCILLAGRHAGKRVVLVGILPSGLLLVTGPFAFNSCPLRRIPQRYVIGTS 462
++R + GTV ILLAGR+ GKRVV + L SGLLL+TGPF N P+RR+ Q YVI TS
Sbjct: 70 KLRSTITPGTVLILLAGRYMGKRVVFLKQLKSGLLLITGPFKINGVPIRRVNQAYVIATS 129
Query: 463 TRISLGNFKLPK 498
T++ + K+ K
Sbjct: 130 TKVDISGVKVDK 141
>04_04_0211 -
23636377-23636532,23636624-23636805,23637853-23637959,
23637997-23638280
Length = 242
Score = 78.6 bits (185), Expect = 5e-15
Identities = 52/127 (40%), Positives = 71/127 (55%), Gaps = 2/127 (1%)
Frame = +1
Query: 286 IRPNLKIGTVCILLAGRHAGKRVVLVGILPSGLLLVTGPFAFNSCPLRRIPQRYVIGTST 465
+R ++ GTV ILLAGR GKRVV + L SGLLLVTGPF N P+RR+ Q YVI TST
Sbjct: 94 MRSSITPGTVLILLAGRFMGKRVVFLKQLKSGLLLVTGPFKINGVPIRRVNQPYVIATST 153
Query: 466 RISLGNFKLPKHFNVITSRRIRSASNVQSNAKRVMTSL-PQKKRNTFHLSS-AKPIQKTV 639
++ + + K + SR + + AK+ L +K T +L K QK V
Sbjct: 154 KVDISGVNVEKFDDKYFSR------DKKQKAKKTEGELFETEKEATKNLPEFKKEDQKVV 207
Query: 640 DEAVIQS 660
D +I++
Sbjct: 208 DAELIKA 214
>09_04_0560 -
18519024-18519145,18519330-18519435,18519671-18519907,
18521371-18521810,18523215-18525012
Length = 900
Score = 30.7 bits (66), Expect = 1.4
Identities = 20/73 (27%), Positives = 35/73 (47%), Gaps = 2/73 (2%)
Frame = +1
Query: 472 SLGNFKLPKHFNVITSRRIRSAS--NVQSNAKRVMTSLPQKKRNTFHLSSAKPIQKTVDE 645
+L + +LP + R+RS + A + ++ K + H SSA I + V E
Sbjct: 132 ALADLRLPPDSTLHLLSRLRSTPYPDAWQLASYIASTAAAAKSDPAHTSSAANINELVKE 191
Query: 646 AVIQSHRSPTRQR 684
++ +HR+ RQR
Sbjct: 192 FILCAHRANMRQR 204
>08_02_0749 - 20769224-20770535,20770649-20771510,20771622-20773263,
20773357-20773701,20773858-20773952,20774218-20774344,
20774430-20774435
Length = 1462
Score = 29.9 bits (64), Expect = 2.5
Identities = 11/31 (35%), Positives = 19/31 (61%)
Frame = +3
Query: 606 SEQRKTDSEDSRRGCDSKPSEPDPTKKGAPR 698
++Q + + D R C S P P+P ++G+PR
Sbjct: 1403 TKQFRNHTGDKLRPCISAPRSPEPQRRGSPR 1433
>03_02_0674 - 10329933-10331537
Length = 534
Score = 29.9 bits (64), Expect = 2.5
Identities = 15/61 (24%), Positives = 29/61 (47%)
Frame = +1
Query: 490 LPKHFNVITSRRIRSASNVQSNAKRVMTSLPQKKRNTFHLSSAKPIQKTVDEAVIQSHRS 669
LPK + +R+R++ ++ K + P KK+ T SS + KT ++ ++
Sbjct: 166 LPKRIVIEADQRVRASPDLDMKVKHASPAPPFKKKATADCSSRVDLAKTSQPSLTKTSAP 225
Query: 670 P 672
P
Sbjct: 226 P 226
>02_02_0470 - 10700092-10700505
Length = 137
Score = 29.9 bits (64), Expect = 2.5
Identities = 13/28 (46%), Positives = 18/28 (64%)
Frame = +1
Query: 298 LKIGTVCILLAGRHAGKRVVLVGILPSG 381
LK G ILL GR+AG++ V+V + G
Sbjct: 5 LKPGKAVILLQGRYAGRKAVIVRVFEEG 32
>01_06_1169 -
35082160-35082292,35082572-35082651,35082727-35082939,
35083243-35083323,35083381-35083492,35083697-35083786,
35083986-35084176,35084683-35084762,35085266-35085347,
35085506-35085590,35086261-35086379
Length = 421
Score = 29.5 bits (63), Expect = 3.3
Identities = 14/38 (36%), Positives = 21/38 (55%)
Frame = +2
Query: 662 IGARPDKEGCSAGYLQKRAFGTSVRSQYSPFGLAFLKI 775
IG E C A Y A+G +++S ++ G+ FLKI
Sbjct: 57 IGFNTGLEVCKASYTVSLAYGGALKSDFAICGIWFLKI 94
>04_04_0212 + 23646043-23646369,23646457-23647304,23647409-23649158
Length = 974
Score = 29.1 bits (62), Expect = 4.3
Identities = 24/82 (29%), Positives = 37/82 (45%), Gaps = 8/82 (9%)
Frame = +1
Query: 529 RSASNVQSNAKR----VMTSLPQ---KKRNTFHLSSAKPIQ-KTVDEAVIQSHRSPTRQR 684
R V+++++R V TS P+ KK+ + +P + + + R P R R
Sbjct: 335 RGGGAVRASSRRPEGAVPTSQPEGERKKKRLRKMGGTEPCRGNLISPSRWSFSRPPRRSR 394
Query: 685 RVLRGIPSKAGFRDFGSKPIFP 750
R L IPS AG R +P P
Sbjct: 395 RALPAIPSPAGLRPRRRRPRRP 416
>10_08_0951 - 21769342-21769752
Length = 136
Score = 28.7 bits (61), Expect = 5.7
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = +1
Query: 298 LKIGTVCILLAGRHAGKRVVLVGILPSG 381
LK G ILL GR AG++ V+V + G
Sbjct: 5 LKPGKAVILLQGRFAGRKAVIVRVFEEG 32
>04_01_0483 +
6343599-6343778,6343886-6344011,6344096-6344173,
6344859-6344984,6345253-6345354,6345425-6345571,
6345861-6345984,6346992-6347152
Length = 347
Score = 28.7 bits (61), Expect = 5.7
Identities = 20/83 (24%), Positives = 37/83 (44%), Gaps = 3/83 (3%)
Frame = -2
Query: 763 RKPEWGILASNRSPESPLLKVSRGAPFFVGSGSDGFESQPRRLSSE---SVLRCSDGTYF 593
+ P +GIL N E ++ S A + S D + +P L V R +GT +
Sbjct: 3 KSPSFGILDDNDCDE---VESSEEATKNLQSDDDDVDDRPGWLPDGWIMEVYRGDNGTIY 59
Query: 592 SFFVAKMSSPSLRLTVRLTHFLF 524
+++ +S + + + H+LF
Sbjct: 60 QYYICPVSGSTFTMKSEVLHYLF 82
>05_03_0086 + 8279518-8280320,8280923-8281844
Length = 574
Score = 28.3 bits (60), Expect = 7.6
Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Frame = +3
Query: 606 SEQRKTD-SEDSRRGCDSKPSEPDPTKKGAPRD 701
+EQ +T ED + S PS+P P KK P++
Sbjct: 14 TEQNRTSFEEDDQFSIRSAPSKPSPDKKSKPKN 46
>04_04_0396 +
24915880-24916222,24916318-24916577,24916689-24916784,
24916889-24917059,24917262-24917975
Length = 527
Score = 28.3 bits (60), Expect = 7.6
Identities = 21/59 (35%), Positives = 28/59 (47%), Gaps = 5/59 (8%)
Frame = -2
Query: 376 WAEFQQVQPSCLHVYQRGECKQFLSSGWV-----GSCVHAC*MDGHR*STDFLLSGVEG 215
W + Q+VQPS YQ F+S+ WV G + G+R FLL+GV G
Sbjct: 65 WKDVQRVQPSAAQFYQ-----GFVSAPWVVKPIWGLLTDVVPVAGYRRRPYFLLAGVIG 118
>09_06_0306 +
22186853-22187267,22187553-22187818,22187913-22188053,
22188521-22188772
Length = 357
Score = 27.9 bits (59), Expect = 10.0
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = +1
Query: 685 RVLRGIPSKAGFRDFGSKPIFPIRAC 762
R++R IP+ G PI+PI++C
Sbjct: 321 RMIRNIPAPEGICGIAMYPIYPIKSC 346
>03_01_0261 -
2007522-2007590,2007684-2007926,2008008-2008106,
2008214-2008693,2008806-2008904,2009097-2009218,
2009296-2009414,2009492-2009559,2009832-2010017,
2010323-2010425,2010477-2010556,2010638-2010694,
2010771-2010913,2010988-2011132,2011501-2011662,
2011759-2011944,2012273-2012365,2012893-2013053,
2013440-2013547,2013664-2013928
Length = 995
Score = 27.9 bits (59), Expect = 10.0
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = +3
Query: 654 SKPSEPDPTKKGAPRDTFKSGLSGLRF 734
S PS P P+ + P F SGL+G F
Sbjct: 38 SSPSPPPPSSRPRPASPFASGLAGRIF 64
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,283,845
Number of Sequences: 37544
Number of extensions: 517171
Number of successful extensions: 1518
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1468
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1517
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2185924824
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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