Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30593
(803 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_13636| Best HMM Match : Ribosomal_L6e (HMM E-Value=0) 49 4e-06
SB_58527| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.83
SB_29102| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.3
SB_28723| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.3
SB_3893| Best HMM Match : PaREP8 (HMM E-Value=2.4) 29 4.4
SB_20511| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.4
SB_43276| Best HMM Match : zf-C2H2 (HMM E-Value=0) 29 5.8
SB_29467| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.8
SB_25470| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.8
SB_3588| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.8
SB_29938| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.7
>SB_13636| Best HMM Match : Ribosomal_L6e (HMM E-Value=0)
Length = 112
Score = 49.2 bits (112), Expect = 4e-06
Identities = 21/34 (61%), Positives = 24/34 (70%)
Frame = +1
Query: 400 PFAFNSCPLRRIPQRYVIGTSTRISLGNFKLPKH 501
PF N PLRRIPQ YVI TST I + + KLP+H
Sbjct: 2 PFKINGVPLRRIPQSYVIATSTHIDVSDVKLPEH 35
>SB_58527| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1659
Score = 31.5 bits (68), Expect = 0.83
Identities = 19/62 (30%), Positives = 34/62 (54%), Gaps = 3/62 (4%)
Frame = +1
Query: 511 ITSRRIRSASNVQSNAKRVMTSLPQ--KKRNTFHL-SSAKPIQKTVDEAVIQSHRSPTRQ 681
ITS+RIRS ++S +R+ P TF+L + + + +DE I+ H +P+++
Sbjct: 934 ITSQRIRSQLLMKSKFERICDRYPNITATTTTFYLFQMSSLVNEELDEIQIERHHAPSKK 993
Query: 682 RR 687
R
Sbjct: 994 VR 995
>SB_29102| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 99
Score = 29.5 bits (63), Expect = 3.3
Identities = 18/59 (30%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
Frame = +3
Query: 570 DIFATKKEKYVPSEQRKTDSEDSRRGCDSKPSEPDPTK-KGAPRDTFKSGLSGLRFEAN 743
D ATK ++ +PS+ R T S+ R+G PS+ T+ G P D + G+ +++
Sbjct: 16 DSQATKDDE-MPSDSRVTRSDRRRQGMKGSPSDSHATRDDGMPSDVHATRGDGMSSDSH 73
>SB_28723| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 861
Score = 29.5 bits (63), Expect = 3.3
Identities = 17/39 (43%), Positives = 22/39 (56%), Gaps = 7/39 (17%)
Frame = +3
Query: 702 TFKSGLSGLRFEANIPHSGL-------RFLKSLGLREIK 797
T KSG+S LRF +P GL R LKS+ L ++K
Sbjct: 274 TVKSGISSLRFRLGLPRPGLLVNTINYRKLKSIDLEQLK 312
>SB_3893| Best HMM Match : PaREP8 (HMM E-Value=2.4)
Length = 339
Score = 29.1 bits (62), Expect = 4.4
Identities = 12/33 (36%), Positives = 16/33 (48%)
Frame = +3
Query: 576 FATKKEKYVPSEQRKTDSEDSRRGCDSKPSEPD 674
FA EK ++ RK D E ++ CD PD
Sbjct: 107 FAADSEKTDVTDTRKKDKEKTKESCDKTTERPD 139
>SB_20511| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 511
Score = 29.1 bits (62), Expect = 4.4
Identities = 14/32 (43%), Positives = 20/32 (62%), Gaps = 8/32 (25%)
Frame = +1
Query: 226 HSGENP--CFICGRPFSK------HVRRIRPN 297
H+GE P C +CGR FS+ H+R++ PN
Sbjct: 474 HTGEKPYACPLCGRAFSRSDHRASHMRKLHPN 505
>SB_43276| Best HMM Match : zf-C2H2 (HMM E-Value=0)
Length = 426
Score = 28.7 bits (61), Expect = 5.8
Identities = 14/32 (43%), Positives = 21/32 (65%), Gaps = 2/32 (6%)
Frame = +1
Query: 217 LLPHSGENP--CFICGRPFSKHVRRIRPNLKI 306
L+ HSG P C+ CG+ FS+H R ++ +L I
Sbjct: 366 LMIHSGRKPYKCYECGKCFSRH-RYLKTHLMI 396
>SB_29467| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 151
Score = 28.7 bits (61), Expect = 5.8
Identities = 17/50 (34%), Positives = 22/50 (44%), Gaps = 1/50 (2%)
Frame = +3
Query: 291 TQPEDRNCLHSPRW*TCRQEGCTCWN-SAQRSAFSYWTFCFQFVPATPYS 437
TQ R HSPR CR CT +N + S+ T C + P +S
Sbjct: 84 TQEAYRKNSHSPRKRQCRNRLCTSYNWIRNKETSSFVTLCHREKPVGHFS 133
>SB_25470| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 592
Score = 28.7 bits (61), Expect = 5.8
Identities = 18/59 (30%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
Frame = +1
Query: 550 SNAKRVMTSLPQKKRNTFHLSSAKPIQKTVDEAVIQSHRSPTRQRRVLRGI--PSKAGF 720
S + V+T +P+K N F+L + +PI + I S TR ++L I P++ G+
Sbjct: 445 SQKRGVITLIPKKTTNRFYLKNWRPITLLNVDYKIASKTIATRISKLLPDIIHPNQTGY 503
>SB_3588| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 391
Score = 28.7 bits (61), Expect = 5.8
Identities = 14/32 (43%), Positives = 21/32 (65%), Gaps = 2/32 (6%)
Frame = +1
Query: 217 LLPHSGENP--CFICGRPFSKHVRRIRPNLKI 306
L+ HSG P C+ CG+ FS+H R ++ +L I
Sbjct: 331 LMIHSGRKPYKCYECGKCFSRH-RYLKTHLMI 361
>SB_29938| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1008
Score = 28.3 bits (60), Expect = 7.7
Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 7/39 (17%)
Frame = +3
Query: 609 EQRKTDSEDSRRGCDSKPS-------EPDPTKKGAPRDT 704
E+ +S + GCDS PS EP+ K AP+DT
Sbjct: 660 EENSEESTKTPEGCDSAPSGAVDKSIEPEYENKSAPKDT 698
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,126,295
Number of Sequences: 59808
Number of extensions: 564491
Number of successful extensions: 1906
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1704
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1882
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2227723674
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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