Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30593
(803 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U00036-4|AAK29850.1| 217|Caenorhabditis elegans Ribosomal prote... 87 1e-17
AF016683-1|AAB66199.3| 1360|Caenorhabditis elegans Hypothetical ... 32 0.55
AC006627-3|AAK85461.1| 504|Caenorhabditis elegans Hypothetical ... 31 0.97
U80447-4|AAB37808.1| 560|Caenorhabditis elegans Temporarily ass... 31 1.3
DQ645890-1|ABG34266.1| 560|Caenorhabditis elegans CIR-1 protein. 31 1.3
Z75536-4|CAA99832.3| 2271|Caenorhabditis elegans Hypothetical pr... 30 1.7
Z75536-3|CAA99831.3| 2279|Caenorhabditis elegans Hypothetical pr... 30 1.7
AF372457-1|AAK54248.1| 2279|Caenorhabditis elegans endocytosis p... 30 1.7
Z74473-7|CAA98952.1| 3871|Caenorhabditis elegans Hypothetical pr... 29 5.1
Z74046-5|CAA98557.1| 3871|Caenorhabditis elegans Hypothetical pr... 29 5.1
AC006695-17|AAF39983.2| 327|Caenorhabditis elegans Hypothetical... 29 5.1
Z78413-8|CAB01665.2| 541|Caenorhabditis elegans Hypothetical pr... 28 6.8
AF519108-1|AAM74222.1| 909|Caenorhabditis elegans EOR-1 protein. 28 6.8
AF502568-1|AAM74151.1| 909|Caenorhabditis elegans EOR-1 protein. 28 6.8
AF100669-8|AAK39268.1| 909|Caenorhabditis elegans Egl-1 suppres... 28 6.8
U53147-6|AAA96117.1| 3766|Caenorhabditis elegans Regulator of pr... 28 9.0
U23412-4|AAK21468.3| 697|Caenorhabditis elegans Ubiquitin-like ... 28 9.0
AF067611-5|AAC19180.1| 145|Caenorhabditis elegans Hypothetical ... 28 9.0
AF016427-10|AAB65348.1| 301|Caenorhabditis elegans Hypothetical... 28 9.0
AC024812-7|AAF59548.2| 419|Caenorhabditis elegans Hypothetical ... 28 9.0
AC024696-9|AAK84508.1| 1900|Caenorhabditis elegans Hypothetical ... 28 9.0
AB095020-1|BAC22612.1| 697|Caenorhabditis elegans similar to SU... 28 9.0
>U00036-4|AAK29850.1| 217|Caenorhabditis elegans Ribosomal protein,
large subunitprotein 6 protein.
Length = 217
Score = 87.4 bits (207), Expect = 1e-17
Identities = 54/124 (43%), Positives = 68/124 (54%), Gaps = 1/124 (0%)
Frame = +1
Query: 286 IRPNLKIGTVCILLAGRHAGKRVVLVGILP-SGLLLVTGPFAFNSCPLRRIPQRYVIGTS 462
+R L GTV I+LAGRH GKRVV + LP SGLLLVTGP N PLRRI Q +VI TS
Sbjct: 67 LRKTLTPGTVLIVLAGRHKGKRVVFLKQLPQSGLLLVTGPHKINGFPLRRIGQAFVIATS 126
Query: 463 TRISLGNFKLPKHFNVITSRRIRSASNVQSNAKRVMTSLPQKKRNTFHLSSAKPIQKTVD 642
++++ K+P+H N + S Q K + S K T K I KTVD
Sbjct: 127 LKVNVSGVKIPEHIN---DEYFKRKSTAQKTGKNIFAS--GKTEYTVSEQRKKDI-KTVD 180
Query: 643 EAVI 654
++
Sbjct: 181 APIL 184
>AF016683-1|AAB66199.3| 1360|Caenorhabditis elegans Hypothetical
protein K09F6.3 protein.
Length = 1360
Score = 31.9 bits (69), Expect = 0.55
Identities = 19/57 (33%), Positives = 26/57 (45%), Gaps = 5/57 (8%)
Frame = +3
Query: 360 CWNSAQRSA-FSYWTFCFQFVPATPYSSALCD----RHLHQNFTRQLQTAKTLQCDY 515
C N RSA F W C+ FVP + +CD ++Q R L T T+ D+
Sbjct: 1167 CSNGIGRSAAFVSWELCYHFVPV---NFEICDFSVAEFVYQKMIRSLDTTSTVNLDF 1220
>AC006627-3|AAK85461.1| 504|Caenorhabditis elegans Hypothetical
protein E01A2.4 protein.
Length = 504
Score = 31.1 bits (67), Expect = 0.97
Identities = 17/52 (32%), Positives = 28/52 (53%)
Frame = +1
Query: 532 SASNVQSNAKRVMTSLPQKKRNTFHLSSAKPIQKTVDEAVIQSHRSPTRQRR 687
S S +S++ V S P++KR SA P ++ D++ + RSP R+ R
Sbjct: 61 SDSRSRSSSPVVKNSPPKRKREPIRAPSASPPRRRRDDSPRKRSRSPPRRTR 112
>U80447-4|AAB37808.1| 560|Caenorhabditis elegans Temporarily
assigned gene nameprotein 326 protein.
Length = 560
Score = 30.7 bits (66), Expect = 1.3
Identities = 17/48 (35%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Frame = +1
Query: 493 PKHFNVITSRRIRSASNVQSNAKRVMTSLPQKKRNTFHLS-SAKPIQK 633
PK RR RS S+++ ++RV P++KRN H S S P+++
Sbjct: 410 PKQRQDSPVRRRRSPSSIRKESQRVRKHSPEQKRNGRHDSRSVSPVRR 457
>DQ645890-1|ABG34266.1| 560|Caenorhabditis elegans CIR-1 protein.
Length = 560
Score = 30.7 bits (66), Expect = 1.3
Identities = 17/48 (35%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Frame = +1
Query: 493 PKHFNVITSRRIRSASNVQSNAKRVMTSLPQKKRNTFHLS-SAKPIQK 633
PK RR RS S+++ ++RV P++KRN H S S P+++
Sbjct: 410 PKQRQDSPVRRRRSPSSIRKESQRVRKHSPEQKRNGRHDSRSVSPVRR 457
>Z75536-4|CAA99832.3| 2271|Caenorhabditis elegans Hypothetical
protein F18C12.2b protein.
Length = 2271
Score = 30.3 bits (65), Expect = 1.7
Identities = 12/16 (75%), Positives = 14/16 (87%)
Frame = +3
Query: 729 RFEANIPHSGLRFLKS 776
RF AN+P+SGLRF KS
Sbjct: 380 RFNANVPYSGLRFSKS 395
>Z75536-3|CAA99831.3| 2279|Caenorhabditis elegans Hypothetical
protein F18C12.2a protein.
Length = 2279
Score = 30.3 bits (65), Expect = 1.7
Identities = 12/16 (75%), Positives = 14/16 (87%)
Frame = +3
Query: 729 RFEANIPHSGLRFLKS 776
RF AN+P+SGLRF KS
Sbjct: 380 RFNANVPYSGLRFSKS 395
>AF372457-1|AAK54248.1| 2279|Caenorhabditis elegans endocytosis
protein RME-8 protein.
Length = 2279
Score = 30.3 bits (65), Expect = 1.7
Identities = 12/16 (75%), Positives = 14/16 (87%)
Frame = +3
Query: 729 RFEANIPHSGLRFLKS 776
RF AN+P+SGLRF KS
Sbjct: 380 RFNANVPYSGLRFSKS 395
>Z74473-7|CAA98952.1| 3871|Caenorhabditis elegans Hypothetical protein
ZC116.3 protein.
Length = 3871
Score = 28.7 bits (61), Expect = 5.1
Identities = 15/47 (31%), Positives = 20/47 (42%)
Frame = +3
Query: 186 PEQYPSNVGSPSTPLRRKSVLHLWPSIQQACTQDPTQPEDRNCLHSP 326
P Q NV SP+T + V H+W CT + D N +P
Sbjct: 2484 PVQCQWNVKSPNTHMIEAKVDHVWLFYNPNCTMEQLMIRDGNSTANP 2530
>Z74046-5|CAA98557.1| 3871|Caenorhabditis elegans Hypothetical protein
ZC116.3 protein.
Length = 3871
Score = 28.7 bits (61), Expect = 5.1
Identities = 15/47 (31%), Positives = 20/47 (42%)
Frame = +3
Query: 186 PEQYPSNVGSPSTPLRRKSVLHLWPSIQQACTQDPTQPEDRNCLHSP 326
P Q NV SP+T + V H+W CT + D N +P
Sbjct: 2484 PVQCQWNVKSPNTHMIEAKVDHVWLFYNPNCTMEQLMIRDGNSTANP 2530
>AC006695-17|AAF39983.2| 327|Caenorhabditis elegans Hypothetical
protein W06H8.6 protein.
Length = 327
Score = 28.7 bits (61), Expect = 5.1
Identities = 17/62 (27%), Positives = 29/62 (46%), Gaps = 1/62 (1%)
Frame = +3
Query: 567 DDIFATKKEKYVPSEQRKTDSEDS-RRGCDSKPSEPDPTKKGAPRDTFKSGLSGLRFEAN 743
D + + E++ +S +S + C S+ S T++ R + LS LR EAN
Sbjct: 54 DHLSCSPLERFPSPLATSAESVNSIKSSCSSRSSAERETERAQRRQLLNTSLSKLREEAN 113
Query: 744 IP 749
+P
Sbjct: 114 MP 115
>Z78413-8|CAB01665.2| 541|Caenorhabditis elegans Hypothetical
protein T01C3.8 protein.
Length = 541
Score = 28.3 bits (60), Expect = 6.8
Identities = 22/95 (23%), Positives = 39/95 (41%), Gaps = 2/95 (2%)
Frame = +1
Query: 226 HSGENPCFICGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRVVLVGILPSGLLL-VTGP 402
HSG N F G+P + R R + K CI++ + V+ G+L T P
Sbjct: 107 HSGPNHEFYYGQPILHSIDRFRSHRKPFPRCIIITTDGKRSKSVMRGLLNKRRSSNSTRP 166
Query: 403 FA-FNSCPLRRIPQRYVIGTSTRISLGNFKLPKHF 504
+ + ++ +R+ +G+FK K +
Sbjct: 167 NTHITNLDTTELSNEFMTSNRSRVFIGSFKKIKEY 201
>AF519108-1|AAM74222.1| 909|Caenorhabditis elegans EOR-1 protein.
Length = 909
Score = 28.3 bits (60), Expect = 6.8
Identities = 17/37 (45%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
Frame = +3
Query: 186 PEQY--PSNVGSPSTPLRRKSVLHLWPSIQQACTQDP 290
P Y PS G+PS+P R SV+H PS Q Q P
Sbjct: 735 PNDYGGPSTYGNPSSPQRAFSVVH--PSQHQHHAQSP 769
>AF502568-1|AAM74151.1| 909|Caenorhabditis elegans EOR-1 protein.
Length = 909
Score = 28.3 bits (60), Expect = 6.8
Identities = 17/37 (45%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
Frame = +3
Query: 186 PEQY--PSNVGSPSTPLRRKSVLHLWPSIQQACTQDP 290
P Y PS G+PS+P R SV+H PS Q Q P
Sbjct: 735 PNDYGGPSTYGNPSSPQRAFSVVH--PSQHQHHAQSP 769
>AF100669-8|AAK39268.1| 909|Caenorhabditis elegans Egl-1
suppressor/dio uptake defective/raf enhancer protein 1
protein.
Length = 909
Score = 28.3 bits (60), Expect = 6.8
Identities = 17/37 (45%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
Frame = +3
Query: 186 PEQY--PSNVGSPSTPLRRKSVLHLWPSIQQACTQDP 290
P Y PS G+PS+P R SV+H PS Q Q P
Sbjct: 735 PNDYGGPSTYGNPSSPQRAFSVVH--PSQHQHHAQSP 769
>U53147-6|AAA96117.1| 3766|Caenorhabditis elegans Regulator of
presynaptic morphologyprotein 1 protein.
Length = 3766
Score = 27.9 bits (59), Expect = 9.0
Identities = 15/40 (37%), Positives = 22/40 (55%)
Frame = +1
Query: 502 FNVITSRRIRSASNVQSNAKRVMTSLPQKKRNTFHLSSAK 621
+N T R + + +NA R+MT LP N HLS+A+
Sbjct: 1874 YNDSTMRLEQDLVWLSANACRIMTQLPINPSNIEHLSTAE 1913
>U23412-4|AAK21468.3| 697|Caenorhabditis elegans Ubiquitin-like
protease protein 1 protein.
Length = 697
Score = 27.9 bits (59), Expect = 9.0
Identities = 16/38 (42%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
Frame = +1
Query: 580 PQKKRNTFHLSSAKPIQKTVDEAVI-QSHRSPTRQRRV 690
PQ+ +N++ LS K K ++EA I + HRS TR R+
Sbjct: 409 PQRYQNSYQLSKQKE-DKLLEEARIREGHRSQTRGDRL 445
>AF067611-5|AAC19180.1| 145|Caenorhabditis elegans Hypothetical
protein C45G7.1 protein.
Length = 145
Score = 27.9 bits (59), Expect = 9.0
Identities = 13/34 (38%), Positives = 15/34 (44%)
Frame = +3
Query: 177 MGEPEQYPSNVGSPSTPLRRKSVLHLWPSIQQAC 278
MGE E + N T R L W SIQ+ C
Sbjct: 108 MGECEVFARNHNGGPTGCRNPGTLEYWQSIQKCC 141
>AF016427-10|AAB65348.1| 301|Caenorhabditis elegans Hypothetical
protein F32D1.7 protein.
Length = 301
Score = 27.9 bits (59), Expect = 9.0
Identities = 14/35 (40%), Positives = 18/35 (51%)
Frame = +3
Query: 582 TKKEKYVPSEQRKTDSEDSRRGCDSKPSEPDPTKK 686
+KK+ + K SEDS +SKPS P KK
Sbjct: 230 SKKKAHQAGLHSKGSSEDSTDSGESKPSSKQPPKK 264
>AC024812-7|AAF59548.2| 419|Caenorhabditis elegans Hypothetical
protein Y54E10BR.8 protein.
Length = 419
Score = 27.9 bits (59), Expect = 9.0
Identities = 12/24 (50%), Positives = 16/24 (66%), Gaps = 2/24 (8%)
Frame = +1
Query: 226 HSGENP--CFICGRPFSKHVRRIR 291
HSGE P C +CG+ F+K+ IR
Sbjct: 328 HSGERPYICNVCGKSFTKNSHVIR 351
>AC024696-9|AAK84508.1| 1900|Caenorhabditis elegans Hypothetical
protein F07B7.12 protein.
Length = 1900
Score = 27.9 bits (59), Expect = 9.0
Identities = 15/40 (37%), Positives = 22/40 (55%)
Frame = +1
Query: 502 FNVITSRRIRSASNVQSNAKRVMTSLPQKKRNTFHLSSAK 621
+N T R + + +NA R+MT LP N HLS+A+
Sbjct: 1810 YNDSTMRLEQDLVWLSANACRIMTQLPINPSNIEHLSTAE 1849
>AB095020-1|BAC22612.1| 697|Caenorhabditis elegans similar to
SUMO-1-specific protease protein.
Length = 697
Score = 27.9 bits (59), Expect = 9.0
Identities = 16/38 (42%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
Frame = +1
Query: 580 PQKKRNTFHLSSAKPIQKTVDEAVI-QSHRSPTRQRRV 690
PQ+ +N++ LS K K ++EA I + HRS TR R+
Sbjct: 409 PQRYQNSYQLSKQKE-DKLLEEARIREGHRSQTRGDRL 445
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,385,336
Number of Sequences: 27780
Number of extensions: 424940
Number of successful extensions: 1328
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 1220
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1326
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1966828226
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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