Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30593
         (803 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                27   0.15 
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    23   3.3  

>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 27.5 bits (58), Expect = 0.15
 Identities = 17/87 (19%), Positives = 37/87 (42%)
 Frame = +1

Query: 457 TSTRISLGNFKLPKHFNVITSRRIRSASNVQSNAKRVMTSLPQKKRNTFHLSSAKPIQKT 636
           TST  S+      + +N+  +  + +      +++   TS+P   R      S +P    
Sbjct: 91  TSTTTSVTPSCRRQRYNIAAANPLLAEKLAAPSSQASPTSIPYATRAEIKTESIQPETTK 150

Query: 637 VDEAVIQSHRSPTRQRRVLRGIPSKAG 717
           VD   +Q H +  +++  L  + ++ G
Sbjct: 151 VDTREVQPHDASEKEQLGLASVKAEPG 177


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 23.0 bits (47), Expect = 3.3
 Identities = 13/38 (34%), Positives = 18/38 (47%)
 Frame = -2

Query: 658 FESQPRRLSSESVLRCSDGTYFSFFVAKMSSPSLRLTV 545
           F + P RLS   VL CS  T +   V  +S    ++ V
Sbjct: 144 FATLPLRLSFCVVLACSTATVYVMSVVGLSKAPAQIPV 181


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 226,340
Number of Sequences: 438
Number of extensions: 4839
Number of successful extensions: 7
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25489170
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)