Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30593
         (803 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g18540.1 68414.m02313 60S ribosomal protein L6 (RPL6A) simila...    86   3e-17
At1g74060.1 68414.m08578 60S ribosomal protein L6 (RPL6B) simila...    84   9e-17
At1g74050.1 68414.m08576 60S ribosomal protein L6 (RPL6C) simila...    84   9e-17
At2g18330.1 68415.m02136 AAA-type ATPase family protein contains...    29   2.7  
At5g08320.1 68418.m00979 expressed protein predicted proteins, H...    29   4.8  
At3g13220.1 68416.m01654 ABC transporter family protein contains...    28   8.3  

>At1g18540.1 68414.m02313 60S ribosomal protein L6 (RPL6A) similar
           to 60S ribosomal protein L6 GI:7208784 from [Cicer
           arietinum]
          Length = 233

 Score = 85.8 bits (203), Expect = 3e-17
 Identities = 54/131 (41%), Positives = 73/131 (55%), Gaps = 5/131 (3%)
 Frame = +1

Query: 283 RIRPNLKIGTVCILLAGRHAGKRVVLVGILPSGLLLVTGPFAFNSCPLRRIPQRYVIGTS 462
           +++ ++  GTV I+LAGR  GKRVV +  L SGLLLVTGPF  N  PLRR+ Q YVIGTS
Sbjct: 84  KLKASITPGTVLIILAGRFKGKRVVFLKQLSSGLLLVTGPFKINGVPLRRVNQAYVIGTS 143

Query: 463 TRISLGNFKL----PKHFNVITSRRIRSASNVQSNA-KRVMTSLPQKKRNTFHLSSAKPI 627
           T+I +          K+F  +  ++ +        A K     +PQ+K         K  
Sbjct: 144 TKIDISGVNTEKFDDKYFGKVAEKKKKKTEGEFFEAEKEEKKEIPQEK---------KED 194

Query: 628 QKTVDEAVIQS 660
           QKTVD A+I+S
Sbjct: 195 QKTVDAALIKS 205


>At1g74060.1 68414.m08578 60S ribosomal protein L6 (RPL6B) similar
           to 60S ribosomal protein L6 (YL 16 like) GB:CAB57309
           from [Cyanophora paradoxa]
          Length = 233

 Score = 84.2 bits (199), Expect = 9e-17
 Identities = 52/131 (39%), Positives = 73/131 (55%), Gaps = 5/131 (3%)
 Frame = +1

Query: 283 RIRPNLKIGTVCILLAGRHAGKRVVLVGILPSGLLLVTGPFAFNSCPLRRIPQRYVIGTS 462
           ++R ++  GTV I+LAGR  GKRVV +  L SGLLLVTGPF  N  PLRR+ Q YVIGTS
Sbjct: 84  KLRASITPGTVLIILAGRFKGKRVVFLKQLASGLLLVTGPFKINGVPLRRVNQAYVIGTS 143

Query: 463 TRISLGNFKL----PKHFNVITSRRIRSASNVQSNA-KRVMTSLPQKKRNTFHLSSAKPI 627
           T++ +    L     K+F  +  ++ +        A K     +PQ K++          
Sbjct: 144 TKVDISGVTLDKFDDKYFGKVAEKKKKKTEGEFFEAEKEEKKEIPQGKKDD--------- 194

Query: 628 QKTVDEAVIQS 660
           QK VD A+I++
Sbjct: 195 QKAVDAALIKA 205


>At1g74050.1 68414.m08576 60S ribosomal protein L6 (RPL6C) similar
           to 60S ribosomal protein L6 (YL 16 like) GB:CAB57309
           from [Cyanophora paradoxa]
          Length = 233

 Score = 84.2 bits (199), Expect = 9e-17
 Identities = 52/131 (39%), Positives = 73/131 (55%), Gaps = 5/131 (3%)
 Frame = +1

Query: 283 RIRPNLKIGTVCILLAGRHAGKRVVLVGILPSGLLLVTGPFAFNSCPLRRIPQRYVIGTS 462
           ++R ++  GTV I+LAGR  GKRVV +  L SGLLLVTGPF  N  PLRR+ Q YVIGTS
Sbjct: 84  KLRASITPGTVLIILAGRFKGKRVVFLKQLASGLLLVTGPFKINGVPLRRVNQAYVIGTS 143

Query: 463 TRISLGNFKL----PKHFNVITSRRIRSASNVQSNA-KRVMTSLPQKKRNTFHLSSAKPI 627
           T++ +    L     K+F  +  ++ +        A K     +PQ K++          
Sbjct: 144 TKVDISGVTLDKFDDKYFGKVAEKKKKKTEGEFFEAEKEEKKEIPQVKKDD--------- 194

Query: 628 QKTVDEAVIQS 660
           QK VD A+I++
Sbjct: 195 QKAVDAALIKA 205


>At2g18330.1 68415.m02136 AAA-type ATPase family protein contains
           Pfam profile: PF00004 ATPase family associated with
           various cellular activities (AAA)
          Length = 636

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 15/52 (28%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
 Frame = +3

Query: 603 PSEQRKTDSEDSRRG-CDSKPSEPDPTKKGAPRDTFKSGLSGLRFEANIPHS 755
           P+E+  TD + S     ++KP   +P   G   ++ + G   LR   + PHS
Sbjct: 42  PAEESPTDHKSSSNSKSETKPDSDEPKGSGFDPESLERGAKALREINSSPHS 93


>At5g08320.1 68418.m00979 expressed protein predicted proteins, Homo
           sapiens and Caenorhabditis elegans
          Length = 150

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 14/46 (30%), Positives = 24/46 (52%)
 Frame = -3

Query: 459 GADHIALRNTA*RARIESKRSSN*KQTAGQNSNKYNPLACMSTSEE 322
           G D +  +NT      + +R S  ++T  ++S K NP+ C + S E
Sbjct: 85  GTDTVLQQNTMPLKVGKRRRDSEMQETGSEDSEKVNPVFCSACSTE 130


>At3g13220.1 68416.m01654 ABC transporter family protein contains
           Pfam profile: PF00005 ABC transporter; similar to white
           protein GB:Q27256 [Anopheles gambiae]
          Length = 685

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 14/44 (31%), Positives = 23/44 (52%)
 Frame = +1

Query: 586 KKRNTFHLSSAKPIQKTVDEAVIQSHRSPTRQRRVLRGIPSKAG 717
           K RN+ H SSA  ++  V + V  ++  P   + +L+GI    G
Sbjct: 73  KVRNS-HASSANLVKTMVSKVVTHTNPDPDGYKHILKGITGSTG 115


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,491,551
Number of Sequences: 28952
Number of extensions: 403469
Number of successful extensions: 1237
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1195
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1237
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1824072800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)