Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30592
         (802 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1635.01 |||voltage-dependent anion-selective channel|Schizos...    46   6e-06
SPAC24C9.06c |||aconitate hydratase|Schizosaccharomyces pombe|ch...    30   0.33 
SPBC9B6.10 |cdc37||Hsp90 co-chaperone Cdc37|Schizosaccharomyces ...    28   1.8  
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha...    27   2.3  
SPAC17G8.08c |||human TMEM165 homolog|Schizosaccharomyces pombe|...    27   4.1  
SPBC30D10.15 |||snoRNP assembly factor |Schizosaccharomyces pomb...    26   5.4  
SPCC1620.08 |||succinate-CoA ligase |Schizosaccharomyces pombe|c...    25   9.5  

>SPAC1635.01 |||voltage-dependent anion-selective
           channel|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 282

 Score = 46.0 bits (104), Expect = 6e-06
 Identities = 23/82 (28%), Positives = 44/82 (53%), Gaps = 1/82 (1%)
 Frame = +2

Query: 2   LGKKANDVFSKGYHFGVFKLDLKTKSESGVEFTSGITSNQES-GKVFGSLSSKFAVKDYG 178
           + K  ND+  + +  G   L ++T + +GV F   ++ NQ++ G + G L + F  K  G
Sbjct: 9   INKLCNDLLQRDFPVGATLLSVRTTAPNGVVFN--VSGNQDAKGVISGKLETSFNDKANG 66

Query: 179 LTFTEKWNTDNTLATDITIQDK 244
           LT ++ W T N L + + + ++
Sbjct: 67  LTISQGWTTANVLESKVGLSEQ 88



 Score = 33.5 bits (73), Expect = 0.036
 Identities = 18/50 (36%), Positives = 29/50 (58%), Gaps = 2/50 (4%)
 Frame = +3

Query: 540 FGGSIYQKVSDKLDCGVSMKWTAGS-ADTL-FGVGAKYALDQDASLHAKI 683
           F  S Y +VS  ++ G ++ W A S A+ +   + +KYALD+D  +  KI
Sbjct: 187 FRASYYHRVSSDVEAGGNVTWDAASTANAITLELASKYALDKDTFVKGKI 236



 Score = 30.7 bits (66), Expect = 0.25
 Identities = 19/79 (24%), Positives = 35/79 (44%)
 Frame = +1

Query: 256 LKVTLEGTFAPQTGTKTGKLKTSFTNDTVAVNTNLDLDLAGPVVDVAAVLNYQGWLAGVH 435
           L + +  TF+P T  KT  L     +  +  + +++      + D    + ++G+LAG  
Sbjct: 93  LHLNVNTTFSPATAAKTAILNLEHQHPLIHTHASVNALERKFLGDFT--VGHEGFLAGAE 150

Query: 436 TQFDTQKAKFSKNNFALGY 492
             +D QK   S     +GY
Sbjct: 151 FGYDVQKGNVSNYAATIGY 169


>SPAC24C9.06c |||aconitate hydratase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 778

 Score = 30.3 bits (65), Expect = 0.33
 Identities = 9/29 (31%), Positives = 20/29 (68%)
 Frame = +1

Query: 703 GLGYPTETYGPGVNPYIGPAAIDGAEISM 789
           G G P++ Y PG N Y+ P++++  ++++
Sbjct: 525 GAGLPSKGYDPGSNTYVAPSSVNVKDVAI 553


>SPBC9B6.10 |cdc37||Hsp90 co-chaperone Cdc37|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 466

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 16/34 (47%), Positives = 19/34 (55%), Gaps = 3/34 (8%)
 Frame = +3

Query: 72  PRASLVLNSP-AGS--PPTRKAERFLAAFPPNLQ 164
           P   L +  P AGS  P T+KA     +FPPNLQ
Sbjct: 378 PNTKLSITIPEAGSTDPETQKARAAFESFPPNLQ 411


>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 4196

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 10/35 (28%), Positives = 22/35 (62%)
 Frame = +1

Query: 262  VTLEGTFAPQTGTKTGKLKTSFTNDTVAVNTNLDL 366
            V++E    P+  T +G+++T+F  DT+ +   L++
Sbjct: 3557 VSIEPLLKPEFFTGSGEVQTTFAKDTITITLPLNI 3591


>SPAC17G8.08c |||human TMEM165 homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 287

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 15/50 (30%), Positives = 24/50 (48%)
 Frame = +2

Query: 74  KSESGVEFTSGITSNQESGKVFGSLSSKFAVKDYGLTFTEKWNTDNTLAT 223
           +S SG    S + S   +  V  +L S   +K + LTF  +W   + +AT
Sbjct: 176 RSRSGHTLMSQLKSKGRN--VMATLFSPLFIKAFALTFVSEWGDRSQIAT 223


>SPBC30D10.15 |||snoRNP assembly factor |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 516

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 15/31 (48%), Positives = 20/31 (64%)
 Frame = +1

Query: 658 KTRLCTPRFNNKSLIGLGYPTETYGPGVNPY 750
           KT LC   F ++S+IG  Y  ET+GP  +PY
Sbjct: 280 KTVLC---FEDRSIIG--YIHETFGPVSSPY 305


>SPCC1620.08 |||succinate-CoA ligase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 433

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 12/36 (33%), Positives = 21/36 (58%)
 Frame = -1

Query: 121 LVGGDPAGEFNTRLALGLQVEFENTKVIALAEDIIG 14
           L GG   G+F++ L  G++  ++ T+    AE +IG
Sbjct: 72  LAGGRGKGQFDSGLRGGVRPVYDATEARMFAEQMIG 107


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,170,981
Number of Sequences: 5004
Number of extensions: 61523
Number of successful extensions: 173
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 168
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 173
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 388424860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)