Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30592
(802 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_05_0521 - 22904656-22904962,22905132-22905340,22905432-229055... 44 2e-04
03_02_0058 - 5316112-5316418,5316497-5316705,5316773-5316859,531... 35 0.066
05_06_0213 + 26414613-26414695,26416907-26417077,26417983-264182... 33 0.26
03_01_0005 + 46370-46454,46962-47071,47381-47545,47672-48463,487... 31 1.4
12_02_1123 - 26250300-26250362,26251988-26252042,26252128-262522... 30 2.5
01_01_1166 + 9287840-9288040,9289752-9289799,9292166-9292282,929... 30 2.5
05_03_0417 - 13690127-13690229,13690644-13690705,13691248-136913... 29 3.3
01_06_0491 - 29763738-29764044,29764266-29764474,29764565-297646... 29 3.3
08_02_1207 - 25302186-25302275,25303089-25303141,25303400-253037... 29 5.7
10_08_0216 - 15942379-15942852,15942956-15943033 28 7.5
01_06_1545 + 38144624-38145301 28 7.5
05_03_0373 - 13194723-13195847,13196219-13196809 28 9.9
>01_05_0521 -
22904656-22904962,22905132-22905340,22905432-22905521,
22905624-22905734,22906401-22906468,22906611-22906653
Length = 275
Score = 43.6 bits (98), Expect = 2e-04
Identities = 20/73 (27%), Positives = 42/73 (57%)
Frame = +1
Query: 301 KTGKLKTSFTNDTVAVNTNLDLDLAGPVVDVAAVLNYQGWLAGVHTQFDTQKAKFSKNNF 480
++GKL+ + ++ +N ++ L+ + P+V+++ V + GV FDT + F+K N
Sbjct: 101 RSGKLELQYLHEYAGINASVGLN-SNPMVNLSGVFGSKELSVGVDVAFDTATSNFTKYNA 159
Query: 481 ALGYQSGDFVSTL 519
AL + D +++L
Sbjct: 160 ALSLTNSDLIASL 172
>03_02_0058 -
5316112-5316418,5316497-5316705,5316773-5316859,
5316945-5317055,5317536-5317643,5319082-5319149,
5319269-5319320
Length = 313
Score = 35.1 bits (77), Expect = 0.066
Identities = 18/68 (26%), Positives = 33/68 (48%)
Frame = +1
Query: 304 TGKLKTSFTNDTVAVNTNLDLDLAGPVVDVAAVLNYQGWLAGVHTQFDTQKAKFSKNNFA 483
+GK++ + ++ + T + + PVV+ + QG G FDT KF+K + A
Sbjct: 140 SGKVEMQYFHENASFATAVGMK-PSPVVEFSGTAGAQGLAFGAEAGFDTATGKFTKYSAA 198
Query: 484 LGYQSGDF 507
+G D+
Sbjct: 199 IGVTKPDY 206
>05_06_0213 +
26414613-26414695,26416907-26417077,26417983-26418219,
26418543-26418572,26419248-26419282,26421680-26421747,
26423067-26423126,26423310-26423399,26423487-26423695,
26424083-26424383
Length = 427
Score = 33.1 bits (72), Expect = 0.26
Identities = 18/73 (24%), Positives = 32/73 (43%)
Frame = +1
Query: 301 KTGKLKTSFTNDTVAVNTNLDLDLAGPVVDVAAVLNYQGWLAGVHTQFDTQKAKFSKNNF 480
K+ K + + + +N + L+ A P+V + V + G FDT F+K N
Sbjct: 255 KSAKAEVQYLHPHAGLNAIVGLN-ANPLVSFSGVFGTGAFAVGTDVAFDTATGDFTKYNA 313
Query: 481 ALGYQSGDFVSTL 519
L + + D + L
Sbjct: 314 GLSHTTPDLTAAL 326
>03_01_0005 +
46370-46454,46962-47071,47381-47545,47672-48463,
48730-48840,48935-49195,49415-49638,49735-49855,
50673-51214,51302-51488,51569-51895,52047-52197,
52287-52424,52918-53013,53276-53357,54411-54679,
54769-54882,55050-55288,55488-55715,55799-55951,
56479-56616,57061-57188,57598-57718,58142-58306,
59486-59633,59772-59898,60025-60118,60119-60268,
60577-60624,60712-60819,61040-61114,61225-61275,
61341-61487,61584-61714,61944-62031,62204-62266,
62336-62582,62830-62981,63056-63126,63214-63370,
63520-63687
Length = 2323
Score = 30.7 bits (66), Expect = 1.4
Identities = 15/23 (65%), Positives = 16/23 (69%)
Frame = -1
Query: 463 TLLFVYQTGCVHQPANPGSLVLL 395
TLLFVYQTG P PG L+LL
Sbjct: 693 TLLFVYQTGEDPPPPAPGGLLLL 715
>12_02_1123 -
26250300-26250362,26251988-26252042,26252128-26252224,
26252364-26253048,26253354-26253721,26253931-26254074,
26254925-26255276
Length = 587
Score = 29.9 bits (64), Expect = 2.5
Identities = 20/56 (35%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
Frame = +2
Query: 53 FKLDLKTKS--ESGVEFTSGITSNQESGKVFGSLSSKFAVKDYGLTFTEKWNTDNT 214
F LDL S + G++F SG+ S + V L+ + A+KDY T+ N D T
Sbjct: 277 FHLDLMHPSVYKVGLQFLSGVISGGNACCVAMLLAFREAIKDYSTPSTKTLNRDLT 332
>01_01_1166 +
9287840-9288040,9289752-9289799,9292166-9292282,
9293018-9293700,9295214-9297190,9298330-9298441,
9299848-9299904
Length = 1064
Score = 29.9 bits (64), Expect = 2.5
Identities = 15/53 (28%), Positives = 28/53 (52%)
Frame = +3
Query: 480 CSRLPIW*LCLHTNVDNGKDFGGSIYQKVSDKLDCGVSMKWTAGSADTLFGVG 638
C+ LP+ + + + K+ + +QKV D+LDCG+ + T G + +G
Sbjct: 444 CNGLPLAIVSIGGMLARMKNKTYAEWQKVCDRLDCGLEINNTVGGMRKILSLG 496
>05_03_0417 -
13690127-13690229,13690644-13690705,13691248-13691330,
13691797-13691911,13692228-13692287,13693375-13693474,
13694781-13694965
Length = 235
Score = 29.5 bits (63), Expect = 3.3
Identities = 15/42 (35%), Positives = 21/42 (50%)
Frame = +3
Query: 579 DCGVSMKWTAGSADTLFGVGAKYALDQDASLHAKIQQQVPHR 704
D G+S++WT L G A YA D +AKI +P +
Sbjct: 41 DPGLSVRWTPEEQAVLEGGLASYAADAAVVRYAKIAMNLPDK 82
>01_06_0491 -
29763738-29764044,29764266-29764474,29764565-29764654,
29764819-29764905,29765598-29765733,29766036-29766186,
29766334-29766502
Length = 382
Score = 29.5 bits (63), Expect = 3.3
Identities = 16/72 (22%), Positives = 32/72 (44%)
Frame = +1
Query: 307 GKLKTSFTNDTVAVNTNLDLDLAGPVVDVAAVLNYQGWLAGVHTQFDTQKAKFSKNNFAL 486
GK + + +D ++ + L + P+V+++ V + G DT F+K + L
Sbjct: 210 GKAELQYLHDYAGISLGVGLT-SKPLVNLSGVFGNKSVAVGADVAVDTSTGDFTKYDAGL 268
Query: 487 GYQSGDFVSTLT 522
+ D + LT
Sbjct: 269 TINNSDLAADLT 280
>08_02_1207 -
25302186-25302275,25303089-25303141,25303400-25303788,
25303968-25304338,25304362-25304502
Length = 347
Score = 28.7 bits (61), Expect = 5.7
Identities = 14/33 (42%), Positives = 19/33 (57%)
Frame = -1
Query: 475 CSWRTLLFVYQTGCVHQPANPGSLVLLQRLQLD 377
CSW + + TG V P+ G L LLQ +QL+
Sbjct: 34 CSWDSGIICSDTGHVPIPSALGDLPLLQTIQLE 66
>10_08_0216 - 15942379-15942852,15942956-15943033
Length = 183
Score = 28.3 bits (60), Expect = 7.5
Identities = 13/24 (54%), Positives = 13/24 (54%)
Frame = +1
Query: 727 YGPGVNPYIGPAAIDGAEISMPGG 798
YGP PY GP A GA S GG
Sbjct: 58 YGPYYGPYYGPYASGGAAASGGGG 81
>01_06_1545 + 38144624-38145301
Length = 225
Score = 28.3 bits (60), Expect = 7.5
Identities = 23/62 (37%), Positives = 32/62 (51%), Gaps = 8/62 (12%)
Frame = -3
Query: 419 QPW*FSTAATSTTGPAKSRSKL---VFTATVSLV---NEVFNFP--VLVPVCGAKVPSRV 264
QP +TAA+S++ P SRSK+ + TVS E N V+VP A P+RV
Sbjct: 29 QPQLAATAASSSSSPFSSRSKIGKDIIDKTVSFTLYQQETMNRTGYVVVPGVDAPAPARV 88
Query: 263 TL 258
+
Sbjct: 89 VV 90
>05_03_0373 - 13194723-13195847,13196219-13196809
Length = 571
Score = 27.9 bits (59), Expect = 9.9
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = +1
Query: 274 GTFAPQTGTKTGKLKTSFTNDTVAVNTNLDLDL 372
GT+ Q T TGK+ +FT + + LDLD+
Sbjct: 537 GTYVAQVTTATGKMLKTFTVEKGDNSLELDLDI 569
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,568,656
Number of Sequences: 37544
Number of extensions: 431174
Number of successful extensions: 1167
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1127
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1167
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2174172540
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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