Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30592
         (802 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_10961| Best HMM Match : Porin_3 (HMM E-Value=0)                    104   1e-22
SB_4373| Best HMM Match : Porin_3 (HMM E-Value=0.0041)                 40   0.003
SB_34768| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.9  
SB_33995| Best HMM Match : Cadherin (HMM E-Value=3e-39)                29   4.4  
SB_49724| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.7  
SB_1362| Best HMM Match : PVL_ORF50 (HMM E-Value=4.5)                  28   7.7  

>SB_10961| Best HMM Match : Porin_3 (HMM E-Value=0)
          Length = 379

 Score =  104 bits (249), Expect = 1e-22
 Identities = 44/82 (53%), Positives = 64/82 (78%)
 Frame = +2

Query: 2   LGKKANDVFSKGYHFGVFKLDLKTKSESGVEFTSGITSNQESGKVFGSLSSKFAVKDYGL 181
           LGK+A DVF KGY FG  K+DLKT +++GVEF +  +S  ++GKVFGSL +K+   DYG+
Sbjct: 106 LGKEARDVFGKGYGFGCVKVDLKTTTKNGVEFKTAGSSMNDTGKVFGSLETKYKYSDYGI 165

Query: 182 TFTEKWNTDNTLATDITIQDKI 247
           + +EKW TDN L+++IT++D+I
Sbjct: 166 SLSEKWTTDNVLSSEITVEDQI 187



 Score = 89.0 bits (211), Expect = 4e-18
 Identities = 38/84 (45%), Positives = 55/84 (65%)
 Frame = +1

Query: 256 LKVTLEGTFAPQTGTKTGKLKTSFTNDTVAVNTNLDLDLAGPVVDVAAVLNYQGWLAGVH 435
           LK+  + TFAP TG K+ K+KT++  D +    ++D D AGP V  +AV+ Y+GW AG  
Sbjct: 191 LKLQFDTTFAPNTGKKSAKIKTAYKQDYLHATGDVDFDFAGPTVQGSAVVGYEGWHAGYQ 250

Query: 436 TQFDTQKAKFSKNNFALGYQSGDF 507
             +DT K+K   NNF+LGY++ DF
Sbjct: 251 VAYDTSKSKLIANNFSLGYRAKDF 274



 Score = 55.6 bits (128), Expect = 4e-08
 Identities = 30/93 (32%), Positives = 48/93 (51%), Gaps = 3/93 (3%)
 Frame = +3

Query: 414 GLAGW-CTHPV*Y--TKSKVLQEQLCSRLPIW*LCLHTNVDNGKDFGGSIYQKVSDKLDC 584
           G  GW   + V Y  +KSK++              +H+ V++   F GSIY ++S  L+ 
Sbjct: 241 GYEGWHAGYQVAYDTSKSKLIANNFSLGYRAKDFQIHSAVNDASKFTGSIYHQISKNLEV 300

Query: 585 GVSMKWTAGSADTLFGVGAKYALDQDASLHAKI 683
              + W  GS++T F  G KY +D+D +L AK+
Sbjct: 301 AAQLNWATGSSNTSFQGGCKYDVDKDTTLRAKV 333


>SB_4373| Best HMM Match : Porin_3 (HMM E-Value=0.0041)
          Length = 187

 Score = 39.5 bits (88), Expect = 0.003
 Identities = 15/41 (36%), Positives = 25/41 (60%)
 Frame = +3

Query: 561 KVSDKLDCGVSMKWTAGSADTLFGVGAKYALDQDASLHAKI 683
           ++S  L+    + W  GS++T F  G KY +D+D +L AK+
Sbjct: 101 EISKNLEVAAQLNWATGSSNTSFQGGCKYDVDKDTTLRAKV 141


>SB_34768| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1190

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 13/32 (40%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
 Frame = -2

Query: 288  WGKSAFKGDFKAAAILSWIVMSVANV-LSVFH 196
            WG   F+GD +  A+L W+  SVA   + V+H
Sbjct: 1100 WGCGLFRGDPQLKAVLQWLAASVAGCPVLVYH 1131


>SB_33995| Best HMM Match : Cadherin (HMM E-Value=3e-39)
          Length = 632

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = -1

Query: 154 GGKAAKNLSAFLVGGDPAGEFN 89
           GG A   L  +LVGGDP  +FN
Sbjct: 389 GGGAGGELRYYLVGGDPQSQFN 410


>SB_49724| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 466

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 19/48 (39%), Positives = 25/48 (52%)
 Frame = +2

Query: 101 SGITSNQESGKVFGSLSSKFAVKDYGLTFTEKWNTDNTLATDITIQDK 244
           SG+   +ESG+   SL+   A     L  T+  NTD T  TD T Q+K
Sbjct: 65  SGLECKKESGEESDSLALSAATDGVLLVATDTQNTDGTW-TDGTDQEK 111


>SB_1362| Best HMM Match : PVL_ORF50 (HMM E-Value=4.5)
          Length = 291

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 18/46 (39%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
 Frame = +1

Query: 349 NTNLDLDLAGPVVDVAAVLNYQG--WLAGVHTQFDTQKAKFSKNNF 480
           N  L +DL   V  V  VL +    WL   +T F+T+K K +KN+F
Sbjct: 95  NLQLYIDLGLKVTKVYRVLEFDQSPWLKQ-YTNFNTEKRKNAKNSF 139


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,183,545
Number of Sequences: 59808
Number of extensions: 491084
Number of successful extensions: 2018
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1834
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2017
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2215746665
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)