Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30592
(802 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U58746-2|AAB00622.2| 283|Caenorhabditis elegans Hypothetical pr... 82 4e-16
Z50875-1|CAA90776.1| 1872|Caenorhabditis elegans Hypothetical pr... 32 0.42
AL021180-3|CAA15982.1| 1872|Caenorhabditis elegans Hypothetical ... 32 0.42
Z19158-4|CAJ76964.1| 719|Caenorhabditis elegans Hypothetical pr... 30 2.2
AC024813-5|AAK27883.1| 255|Caenorhabditis elegans Hypothetical ... 29 3.9
AC024813-4|AAK27882.1| 297|Caenorhabditis elegans Hypothetical ... 29 3.9
U41264-7|AAA82427.2| 819|Caenorhabditis elegans Hypothetical pr... 28 6.8
Z81554-1|CAB04506.1| 838|Caenorhabditis elegans Hypothetical pr... 28 8.9
>U58746-2|AAB00622.2| 283|Caenorhabditis elegans Hypothetical
protein R05G6.7 protein.
Length = 283
Score = 82.2 bits (194), Expect = 4e-16
Identities = 38/83 (45%), Positives = 54/83 (65%), Gaps = 2/83 (2%)
Frame = +2
Query: 2 LGKKANDVFSKGYHFGVFKLDLKTKSESG--VEFTSGITSNQESGKVFGSLSSKFAVKDY 175
LGK A D+F+KGY+FG K+D T++ VEF S + N SGK+ G+L K+ + Y
Sbjct: 9 LGKSAKDLFNKGYNFGFLKIDSTTRAGDNKEVEFKSAASHNIGSGKLGGNLDVKYKIPQY 68
Query: 176 GLTFTEKWNTDNTLATDITIQDK 244
G+T TEKWNT+N L T I + ++
Sbjct: 69 GITLTEKWNTENQLGTVIEVNEQ 91
Score = 58.0 bits (134), Expect = 7e-09
Identities = 27/84 (32%), Positives = 45/84 (53%)
Frame = +1
Query: 256 LKVTLEGTFAPQTGTKTGKLKTSFTNDTVAVNTNLDLDLAGPVVDVAAVLNYQGWLAGVH 435
LKVTL+ +AP G ++GK+K + T V ++ + A PV++ A V + GWL G
Sbjct: 96 LKVTLDSLYAPHAGKRSGKVKLDWALPTARVTADVGVTSA-PVINAAGVFSRDGWLIGAA 154
Query: 436 TQFDTQKAKFSKNNFALGYQSGDF 507
FD+ K + + A G+ + +
Sbjct: 155 ATFDSSSNKLAATSLAFGHSTPQY 178
Score = 48.8 bits (111), Expect = 4e-06
Identities = 20/58 (34%), Positives = 32/58 (55%)
Frame = +3
Query: 510 LHTNVDNGKDFGGSIYQKVSDKLDCGVSMKWTAGSADTLFGVGAKYALDQDASLHAKI 683
LH+ V N DFG S+Y KV+ ++ G + W G + + KYA +D ++ AK+
Sbjct: 180 LHSFVINSTDFGASLYHKVASNVEVGTQLGWKVGGNGADYALATKYAPSRDLTVRAKV 237
>Z50875-1|CAA90776.1| 1872|Caenorhabditis elegans Hypothetical protein
T08A11.1 protein.
Length = 1872
Score = 32.3 bits (70), Expect = 0.42
Identities = 17/52 (32%), Positives = 24/52 (46%)
Frame = +2
Query: 71 TKSESGVEFTSGITSNQESGKVFGSLSSKFAVKDYGLTFTEKWNTDNTLATD 226
T+S G + +S G+ S K+ V +G T EKWN D + TD
Sbjct: 1044 TRSRRGANMEDDRKHSSKSNSA-GNASKKYKVWAWGSTGEEKWNVDMEIGTD 1094
>AL021180-3|CAA15982.1| 1872|Caenorhabditis elegans Hypothetical
protein T08A11.1 protein.
Length = 1872
Score = 32.3 bits (70), Expect = 0.42
Identities = 17/52 (32%), Positives = 24/52 (46%)
Frame = +2
Query: 71 TKSESGVEFTSGITSNQESGKVFGSLSSKFAVKDYGLTFTEKWNTDNTLATD 226
T+S G + +S G+ S K+ V +G T EKWN D + TD
Sbjct: 1044 TRSRRGANMEDDRKHSSKSNSA-GNASKKYKVWAWGSTGEEKWNVDMEIGTD 1094
>Z19158-4|CAJ76964.1| 719|Caenorhabditis elegans Hypothetical
protein T23G5.2a protein.
Length = 719
Score = 29.9 bits (64), Expect = 2.2
Identities = 14/56 (25%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Frame = -1
Query: 541 KSLPLSTLVWRQSHQIGNLEQSCSWRTLLFVYQTGCVHQPANPGSLVLLQRL-QLD 377
K + ++++WR+ H + + + + T++ Y GC H G + + R QLD
Sbjct: 295 KDMVHASIIWRKQHNVDKILEEWTRPTVIKQYFPGCWHNSDKAGRPMYILRFGQLD 350
>AC024813-5|AAK27883.1| 255|Caenorhabditis elegans Hypothetical
protein Y54F10AL.1b protein.
Length = 255
Score = 29.1 bits (62), Expect = 3.9
Identities = 14/47 (29%), Positives = 25/47 (53%)
Frame = +2
Query: 89 VEFTSGITSNQESGKVFGSLSSKFAVKDYGLTFTEKWNTDNTLATDI 229
+E G+ S E+ K+F +S+ ++ + LTF +W + L T I
Sbjct: 184 LEGGGGVASQSETRKIF-LFTSRIFIEAFSLTFVAEWGDRSQLTTII 229
>AC024813-4|AAK27882.1| 297|Caenorhabditis elegans Hypothetical
protein Y54F10AL.1a protein.
Length = 297
Score = 29.1 bits (62), Expect = 3.9
Identities = 14/47 (29%), Positives = 25/47 (53%)
Frame = +2
Query: 89 VEFTSGITSNQESGKVFGSLSSKFAVKDYGLTFTEKWNTDNTLATDI 229
+E G+ S E+ K+F +S+ ++ + LTF +W + L T I
Sbjct: 184 LEGGGGVASQSETRKIF-LFTSRIFIEAFSLTFVAEWGDRSQLTTII 229
>U41264-7|AAA82427.2| 819|Caenorhabditis elegans Hypothetical
protein F10E7.4 protein.
Length = 819
Score = 28.3 bits (60), Expect = 6.8
Identities = 16/38 (42%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Frame = +3
Query: 534 KDFGGSIYQKVSDKLDCGVSMKWTA-GSADTLFGVGAK 644
+DFG + +++DC VS KWTA GS G G K
Sbjct: 690 EDFGNTEVDDGGERVDCEVS-KWTAWGSCSVSCGRGKK 726
>Z81554-1|CAB04506.1| 838|Caenorhabditis elegans Hypothetical
protein F57G4.1 protein.
Length = 838
Score = 27.9 bits (59), Expect = 8.9
Identities = 14/32 (43%), Positives = 16/32 (50%)
Frame = +2
Query: 134 VFGSLSSKFAVKDYGLTFTEKWNTDNTLATDI 229
VFG LSS DYG+T K+ TD I
Sbjct: 252 VFGELSSSKKTIDYGITKQWKYRTDGRFELSI 283
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,766,300
Number of Sequences: 27780
Number of extensions: 359491
Number of successful extensions: 957
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 918
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 955
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1956310428
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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