Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30592
         (802 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U66709-1|AAB07515.1|  182|Apis mellifera ankyrin protein.              23   3.3  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    23   3.3  
DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholi...    23   4.4  
DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholi...    23   4.4  

>U66709-1|AAB07515.1|  182|Apis mellifera ankyrin protein.
          Length = 182

 Score = 23.0 bits (47), Expect = 3.3
 Identities = 11/29 (37%), Positives = 14/29 (48%)
 Frame = +1

Query: 274 GTFAPQTGTKTGKLKTSFTNDTVAVNTNL 360
           GT   Q    TG    +F NDTV+  T +
Sbjct: 86  GTSESQWEDVTGSTPLTFVNDTVSFTTTV 114


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 23.0 bits (47), Expect = 3.3
 Identities = 9/23 (39%), Positives = 17/23 (73%)
 Frame = +2

Query: 53  FKLDLKTKSESGVEFTSGITSNQ 121
           F+LDL+ + E+G + +S IT+ +
Sbjct: 174 FQLDLQLQDEAGGDISSFITNGE 196


>DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 22.6 bits (46), Expect = 4.4
 Identities = 12/46 (26%), Positives = 22/46 (47%)
 Frame = -1

Query: 538 SLPLSTLVWRQSHQIGNLEQSCSWRTLLFVYQTGCVHQPANPGSLV 401
           S+ L+ LV    H+  +     SW  +LF+    C+ + + PG  +
Sbjct: 339 SVVLTVLVLNFHHRTPDRYVMPSWIKMLFLQWLPCLLRMSRPGKKI 384


>DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 22.6 bits (46), Expect = 4.4
 Identities = 12/46 (26%), Positives = 22/46 (47%)
 Frame = -1

Query: 538 SLPLSTLVWRQSHQIGNLEQSCSWRTLLFVYQTGCVHQPANPGSLV 401
           S+ L+ LV    H+  +     SW  +LF+    C+ + + PG  +
Sbjct: 339 SVVLTVLVLNFHHRTPDRYVMPSWIKMLFLQWLPCLLRMSRPGKKI 384


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 213,837
Number of Sequences: 438
Number of extensions: 4527
Number of successful extensions: 12
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25367793
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)