Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30592
         (802 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g01280.1 68416.m00035 porin, putative similar to SP|P42055 34...    40   0.003
At5g37610.1 68418.m04530 hypothetical protein                          29   3.6  
At1g17980.2 68414.m02224 nucleotidyltransferase family protein c...    28   8.3  
At1g17980.1 68414.m02225 nucleotidyltransferase family protein c...    28   8.3  

>At3g01280.1 68416.m00035 porin, putative similar to SP|P42055 34
           kDa outer mitochondrial membrane protein porin
           (Voltage-dependent anion-selective channel protein)
           (VDAC) {Solanum tuberosum}; contains Pfam profile
           PF01459: Eukaryotic porin
          Length = 276

 Score = 39.5 bits (88), Expect = 0.003
 Identities = 18/73 (24%), Positives = 37/73 (50%)
 Frame = +1

Query: 304 TGKLKTSFTNDTVAVNTNLDLDLAGPVVDVAAVLNYQGWLAGVHTQFDTQKAKFSKNNFA 483
           +GK++  + ++   ++T++ L    P V+ + V+       G    FDT+   F+K N  
Sbjct: 103 SGKVELQYLHEYAGISTSMGLT-QNPTVNFSGVIGSNVLAVGTDVSFDTKSGNFTKINAG 161

Query: 484 LGYQSGDFVSTLT 522
           L +   D +++LT
Sbjct: 162 LSFTKEDLIASLT 174


>At5g37610.1 68418.m04530 hypothetical protein
          Length = 163

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 12/46 (26%), Positives = 19/46 (41%)
 Frame = +3

Query: 540 FGGSIYQKVSDKLDCGVSMKWTAGSADTLFGVGAKYALDQDASLHA 677
           F  S YQ++  K  CG   K+        F +G ++    D  + A
Sbjct: 73  FTASYYQRLHSKTVCGAEAKYILSDKSNSFSIGKRHLFGDDDLIQA 118


>At1g17980.2 68414.m02224 nucleotidyltransferase family protein
           contains Pfam profiles: PF01909 nucleotidyltransferase
           domain,  PF04926 poly(A) polymerase predicted RNA
           binding domain
          Length = 586

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = -1

Query: 550 EPPKSLPLSTLVWRQSHQIGNLEQS 476
           +PP+SLP+  +   Q+H+   LE+S
Sbjct: 482 DPPESLPIEKIATPQAHETEELEES 506


>At1g17980.1 68414.m02225 nucleotidyltransferase family protein
           contains Pfam profiles: PF01909 nucleotidyltransferase
           domain,  PF04926 poly(A) polymerase predicted RNA
           binding domain
          Length = 713

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = -1

Query: 550 EPPKSLPLSTLVWRQSHQIGNLEQS 476
           +PP+SLP+  +   Q+H+   LE+S
Sbjct: 609 DPPESLPIEKIATPQAHETEELEES 633


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,015,781
Number of Sequences: 28952
Number of extensions: 339608
Number of successful extensions: 939
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 900
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 938
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1814318400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)