Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30591
         (780 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    22   6.3  
AM292378-1|CAL23190.2|  387|Tribolium castaneum gustatory recept...    21   8.4  

>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 12/37 (32%), Positives = 18/37 (48%)
 Frame = -2

Query: 683 PFSLSSGSRVEEQINPQHPSAGPRGSTPRSLNTSRAN 573
           P S +S +  EE+     P   P  S+PRS++    N
Sbjct: 39  PNSAASPAPPEEEAASPTPGDVPTPSSPRSISEDPLN 75



 Score = 21.4 bits (43), Expect = 8.4
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = -2

Query: 242 YDSTSSQNKFFPG 204
           +DS S QN  FPG
Sbjct: 740 FDSRSRQNSSFPG 752


>AM292378-1|CAL23190.2|  387|Tribolium castaneum gustatory receptor
           candidate 57 protein.
          Length = 387

 Score = 21.4 bits (43), Expect = 8.4
 Identities = 10/30 (33%), Positives = 15/30 (50%)
 Frame = -3

Query: 481 SNHRNVDI*SFSNGLMVLCRVQYNQETRFT 392
           S  RN++  SF   L++LC +       FT
Sbjct: 268 SKSRNIEGVSFGTNLVILCALWITTLLLFT 297


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 212,863
Number of Sequences: 336
Number of extensions: 5442
Number of successful extensions: 13
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 21065107
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)