Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30591
(780 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein ... 131 9e-32
SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0... 128 1e-30
SPAC24C9.10c |mrp4||mitochondrial ribosomal protein subunit S2|S... 31 0.14
SPAC26H5.03 |||WD repeat protein Cac2|Schizosaccharomyces pombe|... 27 3.0
SPCC736.12c |||conserved protein|Schizosaccharomyces pombe|chr 3... 27 4.0
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 26 5.3
SPCC970.09 |sec8||exocyst complex subunit Sec8|Schizosaccharomyc... 26 7.0
SPBC1198.08 |||dipeptidase Dug1 |Schizosaccharomyces pombe|chr 2... 26 7.0
SPAC25H1.09 |mde5|meu30, SPAC4A8.01|alpha-amylase homolog Mde5|S... 26 7.0
SPBC4.01 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||Ma... 25 9.2
SPBC32F12.06 |pch1||cyclin Pch1|Schizosaccharomyces pombe|chr 2|... 25 9.2
>SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein
S0B|Schizosaccharomyces pombe|chr 1|||Manual
Length = 287
Score = 131 bits (317), Expect = 9e-32
Identities = 64/84 (76%), Positives = 69/84 (82%)
Frame = +2
Query: 254 PADVFVISSRPFGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPRLLIVLDPAQD 433
PADV VISSRP+G RAVLKFAAHTGAT IAGRFTPG FTN I +REPRL+IV DP D
Sbjct: 74 PADVCVISSRPYGHRAVLKFAAHTGATAIAGRFTPGNFTNYITRTYREPRLIIVTDPRAD 133
Query: 434 HQPITEASYVNIPVIALCNTDSPL 505
Q I EAS+VNIPVIALC+TDS L
Sbjct: 134 AQAIKEASFVNIPVIALCDTDSIL 157
Score = 87.4 bits (207), Expect = 2e-18
Identities = 36/65 (55%), Positives = 51/65 (78%)
Frame = +3
Query: 63 VLALNEEDVTKMLAATTHLGAENVNFQMETYVYKRRADGTHVINLRRTWEKLVLAARAVV 242
VL ++D+ +LAA +H+G++N+ +ME YV+KRR+DG H+INL +TWEKLVLAAR +
Sbjct: 10 VLNATDDDIKNLLAADSHIGSKNLEVRMENYVWKRRSDGIHIINLGKTWEKLVLAARVIA 69
Query: 243 AIENP 257
IENP
Sbjct: 70 TIENP 74
Score = 54.4 bits (125), Expect = 2e-08
Identities = 31/57 (54%), Positives = 36/57 (63%)
Frame = +1
Query: 511 VDIAIPCNTKSSHSIGLMWWLLAREVLRLRGVLPRGPALGCCGLICSSTRDPEESEK 681
VD+AIP N K SIGL W+LLAREVLRLRG + R A + RDPEE E+
Sbjct: 160 VDVAIPINNKGYKSIGLAWYLLAREVLRLRGNISRTTAWEVMPDL-YFYRDPEEIER 215
>SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0A
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 292
Score = 128 bits (308), Expect = 1e-30
Identities = 63/99 (63%), Positives = 75/99 (75%)
Frame = +2
Query: 254 PADVFVISSRPFGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPRLLIVLDPAQD 433
PADV V+S+R +G RAVLKFAAHTGAT IAGRFTPG FTN I +REPRL++V DP D
Sbjct: 73 PADVCVVSTRTYGHRAVLKFAAHTGATAIAGRFTPGNFTNYITRTYREPRLIVVTDPRAD 132
Query: 434 HQPITEASYVNIPVIALCNTDSPLRLWTLLSHATPSLPT 550
Q I EAS+VNIPVIALC+TDS +L+H ++PT
Sbjct: 133 AQAIKEASFVNIPVIALCDTDS------ILNHVDIAIPT 165
Score = 87.4 bits (207), Expect = 2e-18
Identities = 35/69 (50%), Positives = 53/69 (76%)
Frame = +3
Query: 51 GGLDVLALNEEDVTKMLAATTHLGAENVNFQMETYVYKRRADGTHVINLRRTWEKLVLAA 230
G ++L +ED+ ++LAA H+G++N+ +M+ YV+KRR+DG H++NL +TWEKLVLAA
Sbjct: 5 GRPNILNATDEDIKQLLAANCHIGSKNLEVRMDNYVWKRRSDGVHILNLGKTWEKLVLAA 64
Query: 231 RAVVAIENP 257
R + IENP
Sbjct: 65 RVIATIENP 73
Score = 56.0 bits (129), Expect = 6e-09
Identities = 31/57 (54%), Positives = 36/57 (63%)
Frame = +1
Query: 511 VDIAIPCNTKSSHSIGLMWWLLAREVLRLRGVLPRGPALGCCGLICSSTRDPEESEK 681
VDIAIP N K SIGL+W+LLAREVLR+RG L R + RDPEE E+
Sbjct: 159 VDIAIPTNNKGRKSIGLIWYLLAREVLRVRGTLSRSAPWDVMPDL-YFYRDPEEVER 214
>SPAC24C9.10c |mrp4||mitochondrial ribosomal protein subunit
S2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 263
Score = 31.5 bits (68), Expect = 0.14
Identities = 12/40 (30%), Positives = 24/40 (60%)
Frame = +2
Query: 398 PRLLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRLWT 517
P L+++L+P ++ EA ++P I + +TD+ R+ T
Sbjct: 180 PDLMVILNPLENKSACLEAQKTHVPTIGIIDTDADPRMVT 219
>SPAC26H5.03 |||WD repeat protein Cac2|Schizosaccharomyces pombe|chr
1|||Manual
Length = 512
Score = 27.1 bits (57), Expect = 3.0
Identities = 12/38 (31%), Positives = 19/38 (50%), Gaps = 2/38 (5%)
Frame = +2
Query: 419 DPAQDHQPITEASYV--NIPVIALCNTDSPLRLWTLLS 526
D DH PI + ++ A C DS +R+W L++
Sbjct: 13 DANDDHTPIYSVDFQKNSLNKFATCGGDSKIRIWQLIT 50
>SPCC736.12c |||conserved protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 437
Score = 26.6 bits (56), Expect = 4.0
Identities = 22/68 (32%), Positives = 32/68 (47%)
Frame = -2
Query: 770 VFHPSLHGQEATTSGFSWYPQPVPWLVVHPFSLSSGSRVEEQINPQHPSAGPRGSTPRSL 591
+ P H ++ + YP+ +L+ + S S SR E+ P A R STP L
Sbjct: 266 LLEPYAHSLPSSVAPVGAYPEKSSYLLSNS-SNDSASRKEK------PKA--RASTPPPL 316
Query: 590 NTSRANNH 567
N SRA+ H
Sbjct: 317 NFSRASEH 324
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 26.2 bits (55), Expect = 5.3
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = -2
Query: 656 VEEQINPQHPSAGPRGSTPRSLNTSRANNHHIKP 555
V++Q+N + S P G+T R +T +NN P
Sbjct: 425 VKKQMNYREESHTPHGNTTRKTSTPVSNNRPTTP 458
>SPCC970.09 |sec8||exocyst complex subunit Sec8|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1088
Score = 25.8 bits (54), Expect = 7.0
Identities = 18/48 (37%), Positives = 22/48 (45%), Gaps = 2/48 (4%)
Frame = -2
Query: 269 RTHQRVLDGYDSTSSQ--NKFFPGTTQVDHMGTISTSFVDIGLHLEVN 132
RT + DSTS NK+ G V + S S DIGLH E +
Sbjct: 345 RTSAEMFTTVDSTSRAIVNKYSLGNN-VSTVNPFSKSLYDIGLHAETD 391
>SPBC1198.08 |||dipeptidase Dug1 |Schizosaccharomyces pombe|chr
2|||Manual
Length = 474
Score = 25.8 bits (54), Expect = 7.0
Identities = 16/56 (28%), Positives = 25/56 (44%)
Frame = -3
Query: 448 SNGLMVLCRVQYNQETRFTECSLNLVSKSTWCETPRNRRSTGVRGKLQYSTLTEGP 281
S GL L R + E F + +S + W T + + G+RG ++ EGP
Sbjct: 169 SEGLEDLIRAE--AEKYFAKADCVCISDTYWLGTKKPVLTYGLRGVCYFNITVEGP 222
>SPAC25H1.09 |mde5|meu30, SPAC4A8.01|alpha-amylase homolog
Mde5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 513
Score = 25.8 bits (54), Expect = 7.0
Identities = 12/45 (26%), Positives = 22/45 (48%)
Frame = -2
Query: 266 THQRVLDGYDSTSSQNKFFPGTTQVDHMGTISTSFVDIGLHLEVN 132
T Q ++D D+ + + T V+HMG+ +D G++ N
Sbjct: 118 TEQDLIDLADALHDRGMYLMVDTVVNHMGSSDPRNIDYGIYRPFN 162
>SPBC4.01 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 248
Score = 25.4 bits (53), Expect = 9.2
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = -2
Query: 776 SQVFHPSLHGQEATTSGFSWYPQPVPWLVVHPFSLS 669
S+V H L + TT G ++ WL VHP L+
Sbjct: 82 SRVCH-ELRNWDQTTGGLAYETSRFAWLQVHPVLLA 116
>SPBC32F12.06 |pch1||cyclin Pch1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 342
Score = 25.4 bits (53), Expect = 9.2
Identities = 14/35 (40%), Positives = 19/35 (54%)
Frame = -2
Query: 689 VHPFSLSSGSRVEEQINPQHPSAGPRGSTPRSLNT 585
V P + SS + V Q PQH ++ R + SLNT
Sbjct: 274 VAPGTPSSLASVSTQATPQHQNSSGRTDSFHSLNT 308
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,675,771
Number of Sequences: 5004
Number of extensions: 84407
Number of successful extensions: 223
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 211
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 223
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 377352472
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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