Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30591
(780 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1272 - 25360180-25360286,25360454-25360658,25360748-253609... 124 8e-29
03_01_0582 - 4318837-4318967,4319219-4319399,4319504-4319701,431... 124 8e-29
05_01_0120 - 828834-831143 31 1.4
12_01_1093 - 11374087-11374140,11374337-11374438,11375793-113758... 30 2.4
11_06_0458 + 23808402-23808469,23808800-23809684,23810011-238119... 29 5.5
10_08_0428 + 17842370-17842633,17842835-17842971,17843609-17844314 29 5.5
01_06_0364 - 28749825-28750053,28750442-28750621,28751018-287511... 29 5.5
03_02_0792 + 11236785-11237337,11237711-11238261,11238446-112386... 28 7.2
01_06_0902 + 32853708-32853739,32854787-32855596,32856094-328561... 28 7.2
01_01_0346 + 2756652-2756830,2759178-2759405,2759818-2759905,275... 28 7.2
10_08_0911 - 21499196-21499236,21499368-21499488,21499665-214997... 28 9.6
01_06_0575 - 30357556-30357582,30357698-30357944,30358039-303581... 28 9.6
>07_03_1272 -
25360180-25360286,25360454-25360658,25360748-25360945,
25361034-25361296,25361865-25362009
Length = 305
Score = 124 bits (299), Expect = 8e-29
Identities = 56/85 (65%), Positives = 67/85 (78%)
Frame = +2
Query: 254 PADVFVISSRPFGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPRLLIVLDPAQD 433
P D+ V S+RP+GQRAVLKFA +TGA IAGR TPG FTNQ+Q +F EPRLLI+ DP D
Sbjct: 75 PQDIIVQSARPYGQRAVLKFAQYTGAHAIAGRHTPGTFTNQLQTSFSEPRLLILTDPRTD 134
Query: 434 HQPITEASYVNIPVIALCNTDSPLR 508
HQPI E++ NIP IA C+TDSP+R
Sbjct: 135 HQPIKESALGNIPTIAFCDTDSPMR 159
Score = 92.3 bits (219), Expect = 4e-19
Identities = 41/64 (64%), Positives = 50/64 (78%)
Frame = +3
Query: 66 LALNEEDVTKMLAATTHLGAENVNFQMETYVYKRRADGTHVINLRRTWEKLVLAARAVVA 245
L+ E+D+ MLAA HLG +N +FQME YVYKRR DG ++INL +TWEKL LAAR +VA
Sbjct: 12 LSQREQDIQMMLAADVHLGTKNCDFQMERYVYKRRTDGIYIINLGKTWEKLQLAARVIVA 71
Query: 246 IENP 257
IENP
Sbjct: 72 IENP 75
Score = 49.6 bits (113), Expect = 3e-06
Identities = 26/61 (42%), Positives = 36/61 (59%)
Frame = +1
Query: 499 PTKIVDIAIPCNTKSSHSIGLMWWLLAREVLRLRGVLPRGPALGCCGLICSSTRDPEESE 678
P + VDI IP N K SIG ++WLLAR VL++RG + G + RDPEE++
Sbjct: 157 PMRYVDIGIPANNKGKQSIGCLFWLLARMVLQMRGTILPGHKWDVM-VDLFFYRDPEEAK 215
Query: 679 K 681
+
Sbjct: 216 E 216
>03_01_0582 -
4318837-4318967,4319219-4319399,4319504-4319701,
4319791-4320053,4320453-4320597
Length = 305
Score = 124 bits (299), Expect = 8e-29
Identities = 56/85 (65%), Positives = 67/85 (78%)
Frame = +2
Query: 254 PADVFVISSRPFGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPRLLIVLDPAQD 433
P D+ V S+RP+GQRAVLKFA +TGA IAGR TPG FTNQ+Q +F EPRLLI+ DP D
Sbjct: 75 PQDIIVQSARPYGQRAVLKFAQYTGAHAIAGRHTPGTFTNQLQTSFSEPRLLILTDPRTD 134
Query: 434 HQPITEASYVNIPVIALCNTDSPLR 508
HQPI E++ NIP IA C+TDSP+R
Sbjct: 135 HQPIKESALGNIPTIAFCDTDSPMR 159
Score = 95.5 bits (227), Expect = 4e-20
Identities = 44/75 (58%), Positives = 55/75 (73%)
Frame = +3
Query: 33 ISATMSGGLDVLALNEEDVTKMLAATTHLGAENVNFQMETYVYKRRADGTHVINLRRTWE 212
++A G L+ E+DV MLAA HLG +N +FQME YVYKRR+DG ++INL +TWE
Sbjct: 1 MAAVAGGAARALSQAEQDVQMMLAADVHLGTKNCDFQMERYVYKRRSDGIYIINLGKTWE 60
Query: 213 KLVLAARAVVAIENP 257
KL LAAR +VAIENP
Sbjct: 61 KLQLAARVIVAIENP 75
Score = 49.6 bits (113), Expect = 3e-06
Identities = 26/61 (42%), Positives = 37/61 (60%)
Frame = +1
Query: 499 PTKIVDIAIPCNTKSSHSIGLMWWLLAREVLRLRGVLPRGPALGCCGLICSSTRDPEESE 678
P + VDI IP N K +SIG ++WLLAR VL++RG + G + RDPEE++
Sbjct: 157 PMRYVDIGIPANNKGRNSIGCLFWLLARMVLQMRGTILPGHKWDVM-VDLFFYRDPEEAK 215
Query: 679 K 681
+
Sbjct: 216 E 216
>05_01_0120 - 828834-831143
Length = 769
Score = 30.7 bits (66), Expect = 1.4
Identities = 15/39 (38%), Positives = 22/39 (56%)
Frame = -2
Query: 683 PFSLSSGSRVEEQINPQHPSAGPRGSTPRSLNTSRANNH 567
P SLSS S + + + PS P S+P SL S A+++
Sbjct: 506 PSSLSSDSSISSKYSSDSPSLSPSTSSPTSLGLSPASSN 544
>12_01_1093 -
11374087-11374140,11374337-11374438,11375793-11375873,
11376005-11376343
Length = 191
Score = 29.9 bits (64), Expect = 2.4
Identities = 23/72 (31%), Positives = 29/72 (40%), Gaps = 1/72 (1%)
Frame = +2
Query: 209 GKTCSGCSCCRSHREPA-DVFVISSRPFGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQA 385
G+ SGC CR D ++ R RAV AA + P R+TPG +
Sbjct: 54 GRVASGCLACRRWEHLLRDGDPVAYRRLITRAVCAIAADDLSAPPPPRYTPGNSGHSQAR 113
Query: 386 AFREPRLLIVLD 421
RE IV D
Sbjct: 114 LVREMMKSIVAD 125
>11_06_0458 + 23808402-23808469,23808800-23809684,23810011-23811961,
23812210-23812285,23813064-23813072,23813243-23813335,
23813578-23813581,23813780-23814703,23814926-23815909,
23816073-23816118,23816376-23816951,23817253-23817798,
23817820-23818416
Length = 2252
Score = 28.7 bits (61), Expect = 5.5
Identities = 14/27 (51%), Positives = 17/27 (62%)
Frame = -3
Query: 133 TFSAPRWVVAASILVTSSSLRASTSNP 53
TF A RWV+AA V + L AS S+P
Sbjct: 2100 TFHAHRWVLAARSPVLKAKLSASPSSP 2126
>10_08_0428 + 17842370-17842633,17842835-17842971,17843609-17844314
Length = 368
Score = 28.7 bits (61), Expect = 5.5
Identities = 14/37 (37%), Positives = 18/37 (48%)
Frame = -1
Query: 636 TTSQRWSTGKHTTKPQHFTCQQPPHQTNRVGRLGVAW 526
T+S WST K T KP FT P + + + AW
Sbjct: 325 TSSSIWSTSKWTLKPDAFTLPLPLPLFDNIPKPIAAW 361
>01_06_0364 -
28749825-28750053,28750442-28750621,28751018-28751147,
28751442-28751756,28752033-28752075,28752108-28752500
Length = 429
Score = 28.7 bits (61), Expect = 5.5
Identities = 14/31 (45%), Positives = 16/31 (51%)
Frame = +1
Query: 274 LITALRSACCTEVCRAHRCYAYCGAFHTRCF 366
L+ LR T+V RAHRC A T CF
Sbjct: 97 LLPLLRRRGATDVVRAHRCIPLHPALITSCF 127
>03_02_0792 +
11236785-11237337,11237711-11238261,11238446-11238628,
11238768-11238966,11239055-11239761
Length = 730
Score = 28.3 bits (60), Expect = 7.2
Identities = 18/66 (27%), Positives = 32/66 (48%), Gaps = 2/66 (3%)
Frame = +2
Query: 320 HTGATPIAGRFTPGAFTNQIQAAFREPRLLI--VLDPAQDHQPITEASYVNIPVIALCNT 493
HT +T R TP AF + AA E R+ + + ++ EA Y +I V + +
Sbjct: 270 HTLSTGETVRVTPAAFDSVTPAAIDETRVAVAAIRQKSEFSDVRVEAQYRHIEVFDMRSP 329
Query: 494 DSPLRL 511
+ P+++
Sbjct: 330 EQPMQI 335
>01_06_0902 +
32853708-32853739,32854787-32855596,32856094-32856157,
32856375-32856446
Length = 325
Score = 28.3 bits (60), Expect = 7.2
Identities = 12/36 (33%), Positives = 15/36 (41%)
Frame = +2
Query: 140 PDGDLCLQTTC*WYPCDQLASYLGKTCSGCSCCRSH 247
P +C+ T C C K CS CSC + H
Sbjct: 265 PQNSVCMVTLCTSEICSGRRYAAKKLCSACSCHKRH 300
>01_01_0346 +
2756652-2756830,2759178-2759405,2759818-2759905,
2759998-2760094,2760353-2760393
Length = 210
Score = 28.3 bits (60), Expect = 7.2
Identities = 14/38 (36%), Positives = 23/38 (60%)
Frame = +2
Query: 596 FVVCFPVDQRWDVVG*FVLLPVTLKKVKRDEQQAKEQA 709
F+VCFPV +VV ++ LP ++K + QA E++
Sbjct: 140 FIVCFPVGMVCEVVLIYIALP--FMEMKAQQYQASEKS 175
>10_08_0911 - 21499196-21499236,21499368-21499488,21499665-21499789,
21500187-21500418,21500488-21500668,21501342-21501438,
21501641-21501779,21502024-21502351,21502890-21503137,
21503270-21503543,21504200-21504291,21504451-21504521,
21505091-21505181,21506526-21507380,21507482-21507594,
21508007-21508074,21508655-21508835,21509084-21509186,
21509273-21509379,21510046-21511584,21511661-21511771,
21511856-21511908,21511988-21512063,21512147-21512366,
21512477-21512901,21513193-21513372,21513503-21515474
Length = 2680
Score = 27.9 bits (59), Expect = 9.6
Identities = 20/72 (27%), Positives = 37/72 (51%), Gaps = 5/72 (6%)
Frame = -2
Query: 776 SQVFHPSLHGQEATTSGFSWYPQ-----PVPWLVVHPFSLSSGSRVEEQINPQHPSAGPR 612
S VF S ++ T+ SW+PQ PWL V P +L S ++ + P + +
Sbjct: 1078 SPVFPYSSQTRQPTSGVASWFPQSPGGRAAPWL-VQPQNLIFDSSMKPPV-PASANETAK 1135
Query: 611 GSTPRSLNTSRA 576
G++ ++++ S+A
Sbjct: 1136 GASSKNISISQA 1147
>01_06_0575 -
30357556-30357582,30357698-30357944,30358039-30358161,
30358275-30358301,30358475-30358633,30359764-30359948,
30360225-30360293,30360432-30362354,30363018-30363339,
30363506-30363543
Length = 1039
Score = 27.9 bits (59), Expect = 9.6
Identities = 10/27 (37%), Positives = 14/27 (51%)
Frame = +2
Query: 176 WYPCDQLASYLGKTCSGCSCCRSHREP 256
++PC +GKT S C + HR P
Sbjct: 615 YHPCQPTVRLMGKTVSVCERSKEHRVP 641
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,417,664
Number of Sequences: 37544
Number of extensions: 623799
Number of successful extensions: 1696
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1634
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1696
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2091906552
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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