Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30591
         (780 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_11396| Best HMM Match : Ribosomal_S2 (HMM E-Value=0)               160   1e-39
SB_24073| Best HMM Match : No HMM Matches (HMM E-Value=.)              34   0.11 
SB_3829| Best HMM Match : HLH (HMM E-Value=4.4e-12)                    32   0.60 
SB_39599| Best HMM Match : Extensin_2 (HMM E-Value=0.09)               31   1.0  
SB_99| Best HMM Match : No HMM Matches (HMM E-Value=.)                 31   1.4  
SB_49472| Best HMM Match : BDS_I_II (HMM E-Value=1.5)                  30   2.4  
SB_16496| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.2  
SB_3365| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   3.2  
SB_54185| Best HMM Match : Gal_Lectin (HMM E-Value=2.3)                29   5.6  
SB_43606| Best HMM Match : Y_phosphatase (HMM E-Value=3.9e-26)         29   5.6  
SB_50111| Best HMM Match : GCC2_GCC3 (HMM E-Value=0)                   28   7.4  
SB_21618| Best HMM Match : Yip1 (HMM E-Value=1.1)                      28   7.4  
SB_14043| Best HMM Match : Extensin_1 (HMM E-Value=0.75)               28   7.4  
SB_57493| Best HMM Match : Surf_Ag_VNR (HMM E-Value=0.00037)           28   7.4  
SB_1986| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   9.8  
SB_20481| Best HMM Match : Pox_A_type_inc (HMM E-Value=5.60519e-45)    28   9.8  

>SB_11396| Best HMM Match : Ribosomal_S2 (HMM E-Value=0)
          Length = 328

 Score =  160 bits (389), Expect = 1e-39
 Identities = 73/85 (85%), Positives = 79/85 (92%)
 Frame = +2

Query: 254 PADVFVISSRPFGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPRLLIVLDPAQD 433
           PADV VIS+RP+GQRA+LK+A+HTGATPIAGRFTPG FTNQIQAAFREPRLLIV DP  D
Sbjct: 71  PADVCVISARPYGQRAILKYASHTGATPIAGRFTPGTFTNQIQAAFREPRLLIVCDPRID 130

Query: 434 HQPITEASYVNIPVIALCNTDSPLR 508
           HQP+TEASYVNIPVIA CNTDSPLR
Sbjct: 131 HQPVTEASYVNIPVIAFCNTDSPLR 155



 Score =  109 bits (262), Expect = 2e-24
 Identities = 48/71 (67%), Positives = 59/71 (83%)
 Frame = +3

Query: 45  MSGGLDVLALNEEDVTKMLAATTHLGAENVNFQMETYVYKRRADGTHVINLRRTWEKLVL 224
           MSGGLD+L L EEDV K LAA  HLGA N +FQME YVYKR++DG ++IN+++TWEKL+L
Sbjct: 1   MSGGLDILQLKEEDVVKFLAAGVHLGANNCDFQMEDYVYKRKSDGVNIINVKKTWEKLLL 60

Query: 225 AARAVVAIENP 257
           AAR +V IENP
Sbjct: 61  AARIIVTIENP 71



 Score = 66.1 bits (154), Expect = 3e-11
 Identities = 34/61 (55%), Positives = 41/61 (67%)
 Frame = +1

Query: 499 PTKIVDIAIPCNTKSSHSIGLMWWLLAREVLRLRGVLPRGPALGCCGLICSSTRDPEESE 678
           P + VD+AIPCN K  HSIGLM+WLLAREVLR+RG + R         +    RDPEE+E
Sbjct: 153 PLRHVDVAIPCNNKGIHSIGLMFWLLAREVLRMRGSISRALPWEIMPDL-YFYRDPEEAE 211

Query: 679 K 681
           K
Sbjct: 212 K 212


>SB_24073| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 794

 Score = 34.3 bits (75), Expect = 0.11
 Identities = 22/68 (32%), Positives = 31/68 (45%)
 Frame = -1

Query: 714 PTACSLACCSSLFTFFRVTGRRTNQPTTSQRWSTGKHTTKPQHFTCQQPPHQTNRVGRLG 535
           P  C +   ++  T  R   R TN   T+  W T + T K +  T    P QT+R  +L 
Sbjct: 304 PLICEIPTKTACPTL-RPPVRNTNTRQTTTHWVTRQRTVKVRETTTPHTPRQTSRPRQL- 361

Query: 534 VAWDSNVH 511
           VA   N+H
Sbjct: 362 VAMQDNLH 369


>SB_3829| Best HMM Match : HLH (HMM E-Value=4.4e-12)
          Length = 1650

 Score = 31.9 bits (69), Expect = 0.60
 Identities = 13/41 (31%), Positives = 22/41 (53%)
 Frame = -2

Query: 650 EQINPQHPSAGPRGSTPRSLNTSRANNHHIKPIEWEDLVLH 528
           + ++ Q   AGP+  +P SL  S+ N+H +   E  +L  H
Sbjct: 355 DDLSQQPSQAGPQSESPESLANSQGNSHEMTEFEHTELQQH 395


>SB_39599| Best HMM Match : Extensin_2 (HMM E-Value=0.09)
          Length = 564

 Score = 31.1 bits (67), Expect = 1.0
 Identities = 27/105 (25%), Positives = 44/105 (41%), Gaps = 8/105 (7%)
 Frame = -2

Query: 764 HPSLHGQEATTSGFSWYPQPV--------PWLVVHPFSLSSGSRVEEQINPQHPSAGPRG 609
           HPS +     +S  S +P P+        P L +HP  L + SR     +P HP+  P  
Sbjct: 232 HPSRYTPHGRSSWISMHPTPLDTRVTDGPPGLPLHPTPLDTRSRTIAPGSPMHPT--PLD 289

Query: 608 STPRSLNTSRANNHHIKPIEWEDLVLHGIAMSTILVGSLCCTKQS 474
           +     +   AN  H  P+    LV +      + +  +C T++S
Sbjct: 290 TLVTDNSPRFANAPHPTPL--GTLVTNNSPRLALRIRRICSTEES 332


>SB_99| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 965

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 19/55 (34%), Positives = 27/55 (49%)
 Frame = -3

Query: 490  VAQSNHRNVDI*SFSNGLMVLCRVQYNQETRFTECSLNLVSKSTWCETPRNRRST 326
            V  SN  +V +    N   + CR Q NQ T FT   +  ++    C+T RN RS+
Sbjct: 876  VYNSNKGSVRVHPSDNSGSLNCRKQTNQTTAFTWPGVVNLTWKRGCQTMRNMRSS 930


>SB_49472| Best HMM Match : BDS_I_II (HMM E-Value=1.5)
          Length = 315

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = +1

Query: 547 HSIGLMWWLLAREVLRLRGVLP 612
           H  G +WW+L  E LR + VLP
Sbjct: 46  HDDGSVWWVLTSESLRAKAVLP 67


>SB_16496| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1275

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = +3

Query: 210 EKLVLAARAVVAIENPLMCSSSHHGPSVSVL 302
           +K+ LA RA VAI+  L C + +HG    V+
Sbjct: 482 DKVYLATRATVAIKIVLQCDTRYHGQQNKVI 512


>SB_3365| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 335

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = +3

Query: 210 EKLVLAARAVVAIENPLMCSSSHHGPSVSVL 302
           +K+ LA RA VAI+  L C + +HG    V+
Sbjct: 267 DKVYLATRATVAIKIVLQCDTRYHGQQNKVI 297


>SB_54185| Best HMM Match : Gal_Lectin (HMM E-Value=2.3)
          Length = 225

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 18/53 (33%), Positives = 25/53 (47%)
 Frame = -3

Query: 490 VAQSNHRNVDI*SFSNGLMVLCRVQYNQETRFTECSLNLVSKSTWCETPRNRR 332
           V  SN  +V +    N   + CR Q NQ T FT   +  ++    C+T RN R
Sbjct: 155 VYNSNKGSVRVHPSDNSGSLNCRKQTNQTTAFTWPGVVNLTWKRGCQTMRNMR 207


>SB_43606| Best HMM Match : Y_phosphatase (HMM E-Value=3.9e-26)
          Length = 280

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 18/53 (33%), Positives = 25/53 (47%)
 Frame = -3

Query: 490 VAQSNHRNVDI*SFSNGLMVLCRVQYNQETRFTECSLNLVSKSTWCETPRNRR 332
           V  SN  +V +    N   + CR Q NQ T FT   +  ++    C+T RN R
Sbjct: 196 VYNSNKGSVRVHPSDNSGSLNCRKQTNQTTAFTWPGVVNLTWKRGCQTMRNMR 248


>SB_50111| Best HMM Match : GCC2_GCC3 (HMM E-Value=0)
          Length = 1115

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 19/71 (26%), Positives = 30/71 (42%)
 Frame = -1

Query: 630 SQRWSTGKHTTKPQHFTCQQPPHQTNRVGRLGVAWDSNVHNLSGESVLHKAITGMLTYEA 451
           S +W+   H+    H +CQ     +   GRL + +DSNV      S + K +   L    
Sbjct: 202 SGKWNKDIHS---HHLSCQPFIMPSGMWGRLNITYDSNVCEFLNTSFITKQVRDALNVSD 258

Query: 450 SVMG*WSCAGS 418
           +  G +   GS
Sbjct: 259 NSGGCFKGDGS 269


>SB_21618| Best HMM Match : Yip1 (HMM E-Value=1.1)
          Length = 338

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 14/45 (31%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
 Frame = -2

Query: 701 PWLVVH-PFSLSSGSRVEEQINPQHPSAGPRGSTPRSLNTSRANN 570
           P +VVH P+     + V   + P H S+    ++P+S++TS+ +N
Sbjct: 15  PQVVVHTPYEQQQLTPVHTPLEPVHTSSKSVHTSPQSVHTSQVHN 59


>SB_14043| Best HMM Match : Extensin_1 (HMM E-Value=0.75)
          Length = 568

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 16/38 (42%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
 Frame = -1

Query: 666 RVTGRRTNQPTTSQRWSTGKHTTKPQHFTCQ-QPPHQT 556
           R T  RT +P T++  +T  HTTKP     Q   PH T
Sbjct: 117 RTTKPRTTKPHTTKPCTTKPHTTKPPTTKPQTTKPHTT 154



 Score = 27.9 bits (59), Expect = 9.8
 Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
 Frame = -1

Query: 666 RVTGRRTNQPTTSQRWSTGKHTTKPQHFT--CQQPPHQT 556
           + T   TN+P T++  +T   TTKP H T  C   PH T
Sbjct: 102 KTTKPHTNKPYTTKPRTTKPRTTKP-HTTKPCTTKPHTT 139


>SB_57493| Best HMM Match : Surf_Ag_VNR (HMM E-Value=0.00037)
          Length = 432

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 14/31 (45%), Positives = 21/31 (67%)
 Frame = +2

Query: 416 LDPAQDHQPITEASYVNIPVIALCNTDSPLR 508
           LDP  +HQPIT+ +   I ++A   TD+PL+
Sbjct: 119 LDPDVEHQPITDRAEACICLVA---TDAPLK 146


>SB_1986| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 989

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = +2

Query: 413 VLDPAQDHQPITEASYVNIPVIALCNTDSPLRLWTL 520
           +L PA+  QP+ E     + VI+ C     L LWTL
Sbjct: 399 LLLPAEFTQPVEEPQTEALEVISACLDQGNLGLWTL 434


>SB_20481| Best HMM Match : Pox_A_type_inc (HMM E-Value=5.60519e-45)
          Length = 4160

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 13/38 (34%), Positives = 17/38 (44%)
 Frame = -1

Query: 660  TGRRTNQPTTSQRWSTGKHTTKPQHFTCQQPPHQTNRV 547
            T R  N  T   R ST  +   P+ +    PPHQT  +
Sbjct: 4047 TPREYNFGTAPHRSSTISNLNGPREYNFDNPPHQTTTI 4084


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 28,901,053
Number of Sequences: 59808
Number of extensions: 692828
Number of successful extensions: 1929
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1613
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1921
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2131907602
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)