Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30591
(780 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g72370.1 68414.m08371 40S ribosomal protein SA (RPSaA) identi... 125 3e-29
At3g04770.2 68416.m00514 40S ribosomal protein SA (RPSaB) identi... 120 8e-28
At3g04770.1 68416.m00513 40S ribosomal protein SA (RPSaB) identi... 120 8e-28
At3g03600.1 68416.m00363 ribosomal protein S2, mitochondrial (RP... 33 0.28
At2g22340.1 68415.m02651 hypothetical protein 33 0.28
At3g45620.1 68416.m04927 transducin family protein / WD-40 repea... 31 0.86
At3g02300.1 68416.m00212 regulator of chromosome condensation (R... 30 1.5
At3g54570.1 68416.m06038 calmodulin-binding protein-related cont... 30 2.0
At2g07020.1 68415.m00803 protein kinase family protein contains ... 30 2.0
At3g15920.1 68416.m02013 phox (PX) domain-containing protein wea... 29 3.5
At3g27990.1 68416.m03493 expressed protein Unusual gene which co... 29 4.6
At3g30640.1 68416.m03878 Ulp1 protease family protein contains P... 28 6.0
At3g15370.1 68416.m01949 expansin, putative (EXP12) similar to e... 28 8.0
>At1g72370.1 68414.m08371 40S ribosomal protein SA (RPSaA) identical
to laminin receptor-like protein GB:U01955 [Arabidopsis
thaliana]; identical to cDNA laminin receptor homologue
GI:16379
Length = 298
Score = 125 bits (302), Expect = 3e-29
Identities = 56/85 (65%), Positives = 67/85 (78%)
Frame = +2
Query: 254 PADVFVISSRPFGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPRLLIVLDPAQD 433
P D+ V S+RP+GQRAVLKFA +TGA IAGR TPG FTNQ+Q +F EPRLLI+ DP D
Sbjct: 75 PQDIIVQSARPYGQRAVLKFAQYTGANAIAGRHTPGTFTNQMQTSFSEPRLLILTDPRTD 134
Query: 434 HQPITEASYVNIPVIALCNTDSPLR 508
HQPI E + NIP+IA C+TDSP+R
Sbjct: 135 HQPIKEGALGNIPIIAFCDTDSPMR 159
Score = 85.4 bits (202), Expect = 4e-17
Identities = 38/64 (59%), Positives = 47/64 (73%)
Frame = +3
Query: 66 LALNEEDVTKMLAATTHLGAENVNFQMETYVYKRRADGTHVINLRRTWEKLVLAARAVVA 245
L+ E DV M AA HLG +N N+QME YV+KRR DG ++ NL +TWEKL +AAR +VA
Sbjct: 12 LSQKEADVRMMCAAEVHLGTKNCNYQMERYVFKRRNDGIYIFNLGKTWEKLQMAARVIVA 71
Query: 246 IENP 257
IENP
Sbjct: 72 IENP 75
Score = 53.2 bits (122), Expect = 2e-07
Identities = 22/40 (55%), Positives = 28/40 (70%)
Frame = +1
Query: 499 PTKIVDIAIPCNTKSSHSIGLMWWLLAREVLRLRGVLPRG 618
P + VDI IP N K HSIG ++WLLAR VL++RG + G
Sbjct: 157 PMRFVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIAAG 196
>At3g04770.2 68416.m00514 40S ribosomal protein SA (RPSaB) identical
to p40 protein homolog GB:AAB67866 [Arabidopsis
thaliana]; similar to 40S ribosomal protein SA (P40)
GB:O65751 [Cicer arietinum]
Length = 280
Score = 120 bits (290), Expect = 8e-28
Identities = 54/84 (64%), Positives = 64/84 (76%)
Frame = +2
Query: 254 PADVFVISSRPFGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPRLLIVLDPAQD 433
P D+ V S+RP+GQRAVLKFA +TG IAGR TPG FTNQ+Q +F EPRLLI+ DP D
Sbjct: 76 PKDIIVQSARPYGQRAVLKFAQYTGVNAIAGRHTPGTFTNQMQTSFSEPRLLILTDPRTD 135
Query: 434 HQPITEASYVNIPVIALCNTDSPL 505
HQPI E + NIP IA C+TDSP+
Sbjct: 136 HQPIKEGALGNIPTIAFCDTDSPM 159
Score = 85.0 bits (201), Expect = 5e-17
Identities = 36/60 (60%), Positives = 47/60 (78%)
Frame = +3
Query: 78 EEDVTKMLAATTHLGAENVNFQMETYVYKRRADGTHVINLRRTWEKLVLAARAVVAIENP 257
E D+ ML+A HLG +N N+QME YV+KRR DG ++INL +TW+KL +AAR +VAIENP
Sbjct: 17 EADIQMMLSADVHLGTKNCNYQMERYVFKRRDDGIYIINLGKTWDKLQMAARVIVAIENP 76
Score = 50.0 bits (114), Expect = 2e-06
Identities = 21/37 (56%), Positives = 26/37 (70%)
Frame = +1
Query: 499 PTKIVDIAIPCNTKSSHSIGLMWWLLAREVLRLRGVL 609
P VDI IP N K HSIG ++WLLAR VL++RG +
Sbjct: 158 PMGFVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTI 194
>At3g04770.1 68416.m00513 40S ribosomal protein SA (RPSaB) identical
to p40 protein homolog GB:AAB67866 [Arabidopsis
thaliana]; similar to 40S ribosomal protein SA (P40)
GB:O65751 [Cicer arietinum]
Length = 332
Score = 120 bits (290), Expect = 8e-28
Identities = 54/84 (64%), Positives = 64/84 (76%)
Frame = +2
Query: 254 PADVFVISSRPFGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPRLLIVLDPAQD 433
P D+ V S+RP+GQRAVLKFA +TG IAGR TPG FTNQ+Q +F EPRLLI+ DP D
Sbjct: 76 PKDIIVQSARPYGQRAVLKFAQYTGVNAIAGRHTPGTFTNQMQTSFSEPRLLILTDPRTD 135
Query: 434 HQPITEASYVNIPVIALCNTDSPL 505
HQPI E + NIP IA C+TDSP+
Sbjct: 136 HQPIKEGALGNIPTIAFCDTDSPM 159
Score = 85.0 bits (201), Expect = 5e-17
Identities = 36/60 (60%), Positives = 47/60 (78%)
Frame = +3
Query: 78 EEDVTKMLAATTHLGAENVNFQMETYVYKRRADGTHVINLRRTWEKLVLAARAVVAIENP 257
E D+ ML+A HLG +N N+QME YV+KRR DG ++INL +TW+KL +AAR +VAIENP
Sbjct: 17 EADIQMMLSADVHLGTKNCNYQMERYVFKRRDDGIYIINLGKTWDKLQMAARVIVAIENP 76
Score = 50.0 bits (114), Expect = 2e-06
Identities = 21/37 (56%), Positives = 26/37 (70%)
Frame = +1
Query: 499 PTKIVDIAIPCNTKSSHSIGLMWWLLAREVLRLRGVL 609
P VDI IP N K HSIG ++WLLAR VL++RG +
Sbjct: 158 PMGFVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTI 194
>At3g03600.1 68416.m00363 ribosomal protein S2, mitochondrial (RPS2)
identical to SP|Q9GCB9 Mitochondrial ribosomal protein
S2 {Arabidopsis thaliana}; contains Pfam profile
PF00318: ribosomal protein S2
Length = 219
Score = 32.7 bits (71), Expect = 0.28
Identities = 14/48 (29%), Positives = 27/48 (56%)
Frame = +2
Query: 398 PRLLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRLWTLLSHATPS 541
P ++V D + I EAS + IPV+A+ + + PL + +++ P+
Sbjct: 131 PDCVVVFDSERKSSVILEASKLQIPVVAIVDPNVPLEFFEKITYPVPA 178
>At2g22340.1 68415.m02651 hypothetical protein
Length = 358
Score = 32.7 bits (71), Expect = 0.28
Identities = 13/40 (32%), Positives = 19/40 (47%)
Frame = +2
Query: 116 SWGRKC*LPDGDLCLQTTC*WYPCDQLASYLGKTCSGCSC 235
SW LP+GD +Q C WY + S +G+ + C
Sbjct: 188 SWTEASLLPEGDCFIQLNCLWYKPKEDTSVMGRKMASSDC 227
>At3g45620.1 68416.m04927 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats; similar to
PC326 protein (GI:200241) (PIR2:S37694) [Mus
musculus];Human (H326) translated mRNA - Homo sapiens,
EMBL:HS06631
Length = 481
Score = 31.1 bits (67), Expect = 0.86
Identities = 12/31 (38%), Positives = 21/31 (67%)
Frame = +2
Query: 455 SYVNIPVIALCNTDSPLRLWTLLSHATPSLP 547
S+ +IP++A C + ++LWT +S+ SLP
Sbjct: 371 SHPHIPLLASCGIEKSVKLWTPMSNDVLSLP 401
>At3g02300.1 68416.m00212 regulator of chromosome condensation
(RCC1) family protein weak similarity to UVB-resistance
protein UVR8 [Arabidopsis thaliana] GI:5478530; contains
Pfam profile PF00415: Regulator of chromosome
condensation (RCC1)
Length = 471
Score = 30.3 bits (65), Expect = 1.5
Identities = 13/31 (41%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Frame = -2
Query: 752 HGQEATT-SGFSWYPQPVPWLVVHPFSLSSG 663
+GQ A S ++WYP PV W V L++G
Sbjct: 373 YGQAANEKSSYAWYPSPVDWCVGQVRKLAAG 403
>At3g54570.1 68416.m06038 calmodulin-binding protein-related
contains similarity to potato calmodulin-binding protein
PCBP GI:17933110 from [Solanum tuberosum]
Length = 417
Score = 29.9 bits (64), Expect = 2.0
Identities = 17/58 (29%), Positives = 29/58 (50%)
Frame = -1
Query: 660 TGRRTNQPTTSQRWSTGKHTTKPQHFTCQQPPHQTNRVGRLGVAWDSNVHNLSGESVL 487
TG++ + + ++ S+ + K Q F R GR+G WD+NVH + S+L
Sbjct: 80 TGKKLDSCSREKKQSSSRSLKKGQSF---------KRSGRIGRCWDANVHRATCSSLL 128
>At2g07020.1 68415.m00803 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 700
Score = 29.9 bits (64), Expect = 2.0
Identities = 14/34 (41%), Positives = 17/34 (50%)
Frame = +2
Query: 353 TPGAFTNQIQAAFREPRLLIVLDPAQDHQPITEA 454
TP TNQ++ A E +LDP PI EA
Sbjct: 620 TPMGLTNQVEKAIEEGNFAKILDPLVTDWPIEEA 653
>At3g15920.1 68416.m02013 phox (PX) domain-containing protein weak
similarity to myosin heavy chain [Rana catesbeiana]
GI:4249699; contains Pfam profile PF00787: PX domain
Length = 755
Score = 29.1 bits (62), Expect = 3.5
Identities = 22/86 (25%), Positives = 43/86 (50%)
Frame = +3
Query: 36 SATMSGGLDVLALNEEDVTKMLAATTHLGAENVNFQMETYVYKRRADGTHVINLRRTWEK 215
S+++S +++LA ++ + ++A T L E ++ + ++ GT + + E
Sbjct: 647 SSSLSEAIELLATSDNRIGLLIAETQLLSEEVEKLKLTSGGHR----GTDDLVRKMLTEV 702
Query: 216 LVLAARAVVAIENPLMCSSSHHGPSV 293
L+ AR + + L CS S HG SV
Sbjct: 703 LIDNARLRKQVNSVLRCSLSGHGISV 728
>At3g27990.1 68416.m03493 expressed protein Unusual gene which
contains a pectinesterase gene within a downstream UTR
intron, transcribed on the opposite strand; supported by
cDNA gi:14596042
Length = 91
Score = 28.7 bits (61), Expect = 4.6
Identities = 21/71 (29%), Positives = 31/71 (43%)
Frame = -2
Query: 776 SQVFHPSLHGQEATTSGFSWYPQPVPWLVVHPFSLSSGSRVEEQINPQHPSAGPRGSTPR 597
S F L ++ T FSW +P LV SL S + QH S TP
Sbjct: 8 SDYFDGYLRRKQLQTFTFSWL---LPVLVKQETSLRLSSMPLVRDTSQHHSHLHHQLTPA 64
Query: 596 SLNTSRANNHH 564
+ N++ +++HH
Sbjct: 65 AFNSAESDHHH 75
>At3g30640.1 68416.m03878 Ulp1 protease family protein contains Pfam
profile PF02902: Ulp1 protease family, C-terminal
catalytic domain
Length = 661
Score = 28.3 bits (60), Expect = 6.0
Identities = 16/26 (61%), Positives = 20/26 (76%), Gaps = 1/26 (3%)
Frame = +2
Query: 647 VLLPVTLKKVKRDEQQAKEQA-VGTS 721
VLL VT+KK K E++AKE+A GTS
Sbjct: 329 VLLKVTIKKPKSLEEKAKEKADCGTS 354
>At3g15370.1 68416.m01949 expansin, putative (EXP12) similar to
expansin GI:11191999 from [Lycopersicon esculentum];
alpha-expansin gene family, PMID:11641069
Length = 252
Score = 27.9 bits (59), Expect = 8.0
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = +2
Query: 563 CGGCWHVKC*GFVVCFPVDQRWDVVG*FVLLPVT 664
CGGC+ V+C FP D +W + G V + T
Sbjct: 76 CGGCYQVRC-----DFPADPKWCLRGAAVTVTAT 104
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,852,673
Number of Sequences: 28952
Number of extensions: 473821
Number of successful extensions: 1238
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1199
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1238
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1746037600
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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