Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30590
         (716 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_01_0491 + 3720842-3720958,3721904-3723109                           32   0.40 
04_04_1657 - 35102751-35102868,35102987-35103504,35104065-351042...    31   0.91 
06_03_0140 + 17160406-17160517,17160605-17160718,17160800-171609...    30   1.6  
05_07_0311 - 29139883-29140359,29140641-29140788,29140883-291409...    28   8.5  
02_01_0246 + 1617326-1617367,1618903-1624419,1625040-1625498,162...    28   8.5  
01_06_1652 + 38918159-38918377,38918502-38919428                       28   8.5  

>03_01_0491 + 3720842-3720958,3721904-3723109
          Length = 440

 Score = 32.3 bits (70), Expect = 0.40
 Identities = 18/78 (23%), Positives = 32/78 (41%)
 Frame = +1

Query: 349 KPQTESEVLATSENPKPTESAAPLSDISIKSDTPHNKEASVNKQKRPQRLKSMRLVCCCP 528
           +P+T+   +  S +P P        D S   ++  N++   +   + ++LK    +  CP
Sbjct: 50  EPKTQENTVQDSTSPPPQPEVVDTEDSSADKNSSENQQQQGDTANQKEKLKKPDKILPCP 109

Query: 529 *CVRTDITKEKQCC*GNY 582
            C   D    K C   NY
Sbjct: 110 RCSSMD---TKFCYYNNY 124


>04_04_1657 -
           35102751-35102868,35102987-35103504,35104065-35104211,
           35104289-35106262,35106964-35107089,35107178-35107264,
           35107335-35107424,35107725-35107811,35108248-35108300,
           35109339-35109387
          Length = 1082

 Score = 31.1 bits (67), Expect = 0.91
 Identities = 20/71 (28%), Positives = 32/71 (45%)
 Frame = -1

Query: 443 SDFMEISLKGAADSVGFGFSDVAKTSDSV*GFSSGLGGEVTIGGFGFCCCN*LIPSDSNS 264
           +D  ++ +KGA+  +    S    TS    G  S   G+V + G   C       SDSN+
Sbjct: 206 TDVSDMQVKGASSDIRISVSSALSTSSHGSGDDSESFGDVYVWGEVMCDTTCRQGSDSNA 265

Query: 263 SSKRASLTIMI 231
            S  A+  I++
Sbjct: 266 YSATAATDILV 276


>06_03_0140 +
           17160406-17160517,17160605-17160718,17160800-17160945,
           17161009-17161222,17161725-17161962,17162089-17162239,
           17162534-17162863
          Length = 434

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 18/36 (50%), Positives = 21/36 (58%)
 Frame = -2

Query: 526 GSNKLAALISAFVVVFVYLRTLLYCVVYLILWRYRS 419
           GS+K A  I   V+V V   TLLYC VY   WR R+
Sbjct: 41  GSSKDAMKIMVSVLVVVIFCTLLYC-VYCWRWRKRN 75


>05_07_0311 -
           29139883-29140359,29140641-29140788,29140883-29140959,
           29141227-29141387,29141785-29142803,29142905-29142996,
           29143117-29143256,29143397-29143574
          Length = 763

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = +1

Query: 397 PTESAAPLSDISIKSDTPHNKEASVNKQKRPQR 495
           P ES +PL  +   SD+    E+S+N+Q+ P R
Sbjct: 174 PKESKSPLPPLPELSDSVGETESSINEQRCPIR 206


>02_01_0246 + 1617326-1617367,1618903-1624419,1625040-1625498,
            1625603-1625887,1626016-1626030,1626339-1626419,
            1626909-1627322,1627423-1627719,1627801-1629864
          Length = 3057

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 21/84 (25%), Positives = 35/84 (41%)
 Frame = +1

Query: 193  ASHRHDAGRVVCRIIIVSDARLEELLESEGINQLQQQXXXXXXXXXXXXXEEKPQTESEV 372
            A     AG+ V      S++ L  +  + GI Q+                +E+   E   
Sbjct: 1743 AEETSHAGQAVSSAEKFSESNLSAVELTHGIQQVHYLETMEEMKGTEGTCDEEICYEQT- 1801

Query: 373  LATSENPKPTESAAPLSDISIKSD 444
             ATSE+P PT++   L D  ++S+
Sbjct: 1802 -ATSEDPSPTDNGKSLQDYHVESN 1824


>01_06_1652 + 38918159-38918377,38918502-38919428
          Length = 381

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 24/73 (32%), Positives = 35/73 (47%), Gaps = 5/73 (6%)
 Frame = -1

Query: 419 KGAADSVGFGFSDVAKTSDSV*GFSS--GLGG---EVTIGGFGFCCCN*LIPSDSNSSSK 255
           KG   +VGF        S +V G+SS  G+GG   +  +GG     C    P D  S S 
Sbjct: 90  KGGYVAVGFSQDGAMVGSSAVAGWSSGNGVGGVAKQYKLGGTSSRSC----PPDQGSLSL 145

Query: 254 RASLTIMIRQTTR 216
            A  T+++ Q++R
Sbjct: 146 VAKNTLVVAQSSR 158


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,430,416
Number of Sequences: 37544
Number of extensions: 300251
Number of successful extensions: 851
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 821
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 851
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1862792824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)