Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30590
         (716 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_19442| Best HMM Match : Beach (HMM E-Value=0)                       31   1.2  
SB_47328| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.8  

>SB_19442| Best HMM Match : Beach (HMM E-Value=0)
          Length = 796

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 12/22 (54%), Positives = 15/22 (68%)
 Frame = -2

Query: 421 SKAPPIL*ALDFQMWPKLRTPF 356
           SK PPI  AL  Q+WP++R  F
Sbjct: 775 SKTPPIKPALQLQVWPQIRAQF 796


>SB_47328| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1634

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 18/65 (27%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
 Frame = +1

Query: 367  EVLATSENPKPTESAAPLSDISIKSDTPHNKEASVNKQKRPQRLKSM-RLVCCCP*CVRT 543
            E+  TS   KPT +     +   +SDTP N+ +S +  K P  ++S  +++ C   C  +
Sbjct: 1547 EIQLTSTITKPTANQ-DFENQKTRSDTPQNRFSSNDNVKTPSFMQSTEQMLICISHCPAS 1605

Query: 544  DITKE 558
             I ++
Sbjct: 1606 SIPRD 1610


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,041,086
Number of Sequences: 59808
Number of extensions: 342219
Number of successful extensions: 879
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 797
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 871
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1901817086
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)