Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30590
         (716 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ682657-1|ABG89105.1|  546|Homo sapiens tricellulin isoform a1 ...    31   4.1  
DQ682656-1|ABG89104.1|  558|Homo sapiens tricellulin isoform a p...    31   4.1  
BC033689-1|AAH33689.1|  558|Homo sapiens MARVEL domain containin...    31   4.1  
AK055094-1|BAB70853.1|  457|Homo sapiens protein ( Homo sapiens ...    31   4.1  
AB219937-1|BAE54514.1|  457|Homo sapiens TRICbeta protein.             31   4.1  
AB219936-1|BAE54513.1|  558|Homo sapiens TRIC protein.                 31   4.1  

>DQ682657-1|ABG89105.1|  546|Homo sapiens tricellulin isoform a1
           protein.
          Length = 546

 Score = 31.1 bits (67), Expect = 4.1
 Identities = 17/42 (40%), Positives = 26/42 (61%)
 Frame = -2

Query: 544 LFLRIRGSNKLAALISAFVVVFVYLRTLLYCVVYLILWRYRS 419
           +F R+ G  ++AA+I  FV + VYL + L C   L LWR+ +
Sbjct: 333 VFCRVEGG-QIAAMIFLFVTMIVYLISALVC---LKLWRHEA 370


>DQ682656-1|ABG89104.1|  558|Homo sapiens tricellulin isoform a
           protein.
          Length = 558

 Score = 31.1 bits (67), Expect = 4.1
 Identities = 17/42 (40%), Positives = 26/42 (61%)
 Frame = -2

Query: 544 LFLRIRGSNKLAALISAFVVVFVYLRTLLYCVVYLILWRYRS 419
           +F R+ G  ++AA+I  FV + VYL + L C   L LWR+ +
Sbjct: 333 VFCRVEGG-QIAAMIFLFVTMIVYLISALVC---LKLWRHEA 370


>BC033689-1|AAH33689.1|  558|Homo sapiens MARVEL domain containing 2
           protein.
          Length = 558

 Score = 31.1 bits (67), Expect = 4.1
 Identities = 17/42 (40%), Positives = 26/42 (61%)
 Frame = -2

Query: 544 LFLRIRGSNKLAALISAFVVVFVYLRTLLYCVVYLILWRYRS 419
           +F R+ G  ++AA+I  FV + VYL + L C   L LWR+ +
Sbjct: 333 VFCRVEGG-QIAAMIFLFVTMIVYLISALVC---LKLWRHEA 370


>AK055094-1|BAB70853.1|  457|Homo sapiens protein ( Homo sapiens
           cDNA FLJ30532 fis, clone BRAWH2001129, weakly similar to
           OCCLUDIN. ).
          Length = 457

 Score = 31.1 bits (67), Expect = 4.1
 Identities = 17/42 (40%), Positives = 26/42 (61%)
 Frame = -2

Query: 544 LFLRIRGSNKLAALISAFVVVFVYLRTLLYCVVYLILWRYRS 419
           +F R+ G  ++AA+I  FV + VYL + L C   L LWR+ +
Sbjct: 333 VFCRVEGG-QIAAMIFLFVTMIVYLISALVC---LKLWRHEA 370


>AB219937-1|BAE54514.1|  457|Homo sapiens TRICbeta protein.
          Length = 457

 Score = 31.1 bits (67), Expect = 4.1
 Identities = 17/42 (40%), Positives = 26/42 (61%)
 Frame = -2

Query: 544 LFLRIRGSNKLAALISAFVVVFVYLRTLLYCVVYLILWRYRS 419
           +F R+ G  ++AA+I  FV + VYL + L C   L LWR+ +
Sbjct: 333 VFCRVEGG-QIAAMIFLFVTMIVYLISALVC---LKLWRHEA 370


>AB219936-1|BAE54513.1|  558|Homo sapiens TRIC protein.
          Length = 558

 Score = 31.1 bits (67), Expect = 4.1
 Identities = 17/42 (40%), Positives = 26/42 (61%)
 Frame = -2

Query: 544 LFLRIRGSNKLAALISAFVVVFVYLRTLLYCVVYLILWRYRS 419
           +F R+ G  ++AA+I  FV + VYL + L C   L LWR+ +
Sbjct: 333 VFCRVEGG-QIAAMIFLFVTMIVYLISALVC---LKLWRHEA 370


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 87,124,639
Number of Sequences: 237096
Number of extensions: 1630850
Number of successful extensions: 7940
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7676
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7940
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8399192100
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)