Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30590
         (716 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z93379-4|CAB07588.1|  306|Caenorhabditis elegans Hypothetical pr...    29   4.4  
AF078790-14|AAC26930.1|  335|Caenorhabditis elegans Hypothetical...    29   4.4  
AF047663-3|AAC04452.1|  137|Caenorhabditis elegans Hypothetical ...    28   5.8  
Z81037-9|CAB02749.2|  425|Caenorhabditis elegans Hypothetical pr...    28   7.7  
U64858-5|AAB18284.1|  409|Caenorhabditis elegans Hypothetical pr...    28   7.7  
AF079508-1|AAC28387.1| 1156|Caenorhabditis elegans germline RNA ...    28   7.7  
AF039718-2|AAB96745.2| 1156|Caenorhabditis elegans Germ-line hel...    28   7.7  
AF038623-8|AAB94160.2|  631|Caenorhabditis elegans Hypothetical ...    28   7.7  

>Z93379-4|CAB07588.1|  306|Caenorhabditis elegans Hypothetical
           protein F21H7.5 protein.
          Length = 306

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 16/43 (37%), Positives = 24/43 (55%)
 Frame = +1

Query: 373 LATSENPKPTESAAPLSDISIKSDTPHNKEASVNKQKRPQRLK 501
           L  ++N  PT + A +SD+SIKSD+    E S   +  P + K
Sbjct: 142 LNKAKNLCPTVNQADVSDVSIKSDSGEKSEKSKALKLVPNQSK 184


>AF078790-14|AAC26930.1|  335|Caenorhabditis elegans Hypothetical
           protein F36H12.3 protein.
          Length = 335

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 14/43 (32%), Positives = 21/43 (48%)
 Frame = +1

Query: 343 EEKPQTESEVLATSENPKPTESAAPLSDISIKSDTPHNKEASV 471
           EEK + E +V      PKP  S  P  D+  K+D    K+ ++
Sbjct: 207 EEKKEDEKKVEPKPGEPKPHISIEPPGDLMFKADQQEQKKLTL 249


>AF047663-3|AAC04452.1|  137|Caenorhabditis elegans Hypothetical
           protein W09G12.9 protein.
          Length = 137

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 12/41 (29%), Positives = 27/41 (65%)
 Frame = -2

Query: 523 SNKLAALISAFVVVFVYLRTLLYCVVYLILWRYRSKAPPIL 401
           +N+LA ++   +++   L  +++C+++++  R RS  PPIL
Sbjct: 8   TNELAVVL---LLIAAALLVVVFCLIWMLKCRKRSSQPPIL 45


>Z81037-9|CAB02749.2|  425|Caenorhabditis elegans Hypothetical
           protein C17E4.1 protein.
          Length = 425

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 18/52 (34%), Positives = 30/52 (57%), Gaps = 2/52 (3%)
 Frame = +1

Query: 361 ESEVLATSENPKPTESAAPLSDISIKSDTPHNKEAS--VNKQKRPQRLKSMR 510
           E E   T++ P P  SAAP+S +  KS T  N++++  + +QK  +R  + R
Sbjct: 95  EPETAETAKTPSP--SAAPVSPVLEKSKTKTNQKSTTEIEQQKIVKRPSANR 144


>U64858-5|AAB18284.1|  409|Caenorhabditis elegans Hypothetical
           protein C16D9.4 protein.
          Length = 409

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 18/45 (40%), Positives = 22/45 (48%)
 Frame = +1

Query: 346 EKPQTESEVLATSENPKPTESAAPLSDISIKSDTPHNKEASVNKQ 480
           EKPQ  S+V+ TS   KP +S    S  S     P N   S+ KQ
Sbjct: 85  EKPQRSSKVINTSSESKPAQSQIAASQRS-SPGYPQNL-TSIGKQ 127


>AF079508-1|AAC28387.1| 1156|Caenorhabditis elegans germline RNA
           helicase-4 protein.
          Length = 1156

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 17/37 (45%), Positives = 20/37 (54%)
 Frame = -1

Query: 416 GAADSVGFGFSDVAKTSDSV*GFSSGLGGEVTIGGFG 306
           GA +S GF      +TS S   F SG GG+ T  GFG
Sbjct: 360 GATESSGF---PTKETSTSGGTFGSGFGGKPTSTGFG 393


>AF039718-2|AAB96745.2| 1156|Caenorhabditis elegans Germ-line
           helicase protein 4 protein.
          Length = 1156

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 17/37 (45%), Positives = 20/37 (54%)
 Frame = -1

Query: 416 GAADSVGFGFSDVAKTSDSV*GFSSGLGGEVTIGGFG 306
           GA +S GF      +TS S   F SG GG+ T  GFG
Sbjct: 360 GATESSGF---PTKETSTSGGTFGSGFGGKPTSTGFG 393


>AF038623-8|AAB94160.2|  631|Caenorhabditis elegans Hypothetical
           protein T08B6.4 protein.
          Length = 631

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 11/36 (30%), Positives = 19/36 (52%)
 Frame = +1

Query: 382 SENPKPTESAAPLSDISIKSDTPHNKEASVNKQKRP 489
           S N    +S   + D+ +++  P N E ++ K KRP
Sbjct: 158 SNNMTGKDSNKDVKDVDVEAANPENPETNICKDKRP 193


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,220,225
Number of Sequences: 27780
Number of extensions: 266597
Number of successful extensions: 812
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 790
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 812
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1676746902
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)