Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30590
         (716 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    24   1.7  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    22   6.7  
S76956-1|AAB33931.1|  168|Apis mellifera olfactory receptor prot...    21   8.8  

>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = -2

Query: 220 LGRHHGDD*PVYVNPKIFRSILTLIVFFLTVR 125
           + RH+G     YV P +   +LTL V +L  R
Sbjct: 248 ISRHYGILHATYVIPAVTMMLLTLTVLWLDSR 279


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 7/17 (41%), Positives = 13/17 (76%)
 Frame = -2

Query: 484 VFVYLRTLLYCVVYLIL 434
           VFV++  + YC+V ++L
Sbjct: 316 VFVFMALMEYCLVNIVL 332


>S76956-1|AAB33931.1|  168|Apis mellifera olfactory receptor
           protein.
          Length = 168

 Score = 21.4 bits (43), Expect = 8.8
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = -2

Query: 520 NKLAALISAFVVVFVYLRTLLYCVVYLILWRYRSKA 413
           NKLA  I A  V    + T+L   +Y+++   R  A
Sbjct: 74  NKLAVFIVAGAVGVFSVLTILISYIYILMAILRMSA 109


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 171,817
Number of Sequences: 438
Number of extensions: 3328
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22170330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)