Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30590
         (716 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g11005.1 68415.m01177 glycine-rich protein                          28   5.4  
At5g46640.1 68418.m05744 DNA-binding family protein contains a A...    28   7.1  
At3g24190.1 68416.m03036 ABC1 family protein contains Pfam domai...    28   7.1  
At2g25625.2 68415.m03071 expressed protein                             28   7.1  
At4g18190.1 68417.m02703 purine permease family protein similar ...    27   9.4  

>At2g11005.1 68415.m01177 glycine-rich protein 
          Length = 170

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 21/55 (38%), Positives = 26/55 (47%)
 Frame = -1

Query: 416 GAADSVGFGFSDVAKTSDSV*GFSSGLGGEVTIGGFGFCCCN*LIPSDSNSSSKR 252
           G+ D  G G    ++ SD   G SSG GG    GGFG    N  + SDS+    R
Sbjct: 29  GSGDGGGSGDGGGSRDSDGS-GDSSG-GGSGDSGGFGDNSDNNSVSSDSSGGGSR 81


>At5g46640.1 68418.m05744 DNA-binding family protein contains a AT
           hook motif (DNA binding motifs with a preference for A/T
           rich regions), Pfam:PF02178
          Length = 386

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 12/48 (25%), Positives = 24/48 (50%)
 Frame = +1

Query: 346 EKPQTESEVLATSENPKPTESAAPLSDISIKSDTPHNKEASVNKQKRP 489
           +KP+  S  +A  +NP+P  + A + +    S  P ++ +  N+   P
Sbjct: 300 KKPKQSSVNIARGQNPEPASAPANMLNFGSVSQGPSSESSEENESGSP 347


>At3g24190.1 68416.m03036 ABC1 family protein contains Pfam domain,
           PF03109: ABC1 family
          Length = 793

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 12/36 (33%), Positives = 21/36 (58%)
 Frame = +1

Query: 367 EVLATSENPKPTESAAPLSDISIKSDTPHNKEASVN 474
           ++LA + +PKPT+++ P S     S +P +    VN
Sbjct: 39  QILAVATDPKPTQTSPPKSTTVNGSSSPSSASKVVN 74


>At2g25625.2 68415.m03071 expressed protein
          Length = 151

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 17/34 (50%), Positives = 19/34 (55%)
 Frame = -1

Query: 302 CCCN*LIPSDSNSSSKRASLTIMIRQTTRPASWR 201
           CC N L P DSNS+   ASL     +TT   SWR
Sbjct: 7   CCLN-LPPLDSNSAQSLASLL----KTTSKISWR 35


>At4g18190.1 68417.m02703 purine permease family protein similar to
           purine permease [Arabidopsis thaliana] GI:7620007;
           contains Pfam profile PF03151: Domain of unknown
           function, DUF250
          Length = 358

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 23/66 (34%), Positives = 30/66 (45%), Gaps = 1/66 (1%)
 Frame = -2

Query: 652 GKLIANKCILYHF-LNLPPVNLCSDSCLSNIAFL**CLFLRIRGSNKLAALISAFVVVFV 476
           G L+A  CILY F L   PV+  S    S +AF    +F     S K+   I   +V+  
Sbjct: 88  GLLVAGHCILYSFGLLYLPVSTFSLISASQLAFN--AVFSYFLNSQKITPFILNSLVLLT 145

Query: 475 YLRTLL 458
              TLL
Sbjct: 146 ISSTLL 151


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,356,423
Number of Sequences: 28952
Number of extensions: 245529
Number of successful extensions: 673
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 641
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 672
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1555552968
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)