Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30589
         (783 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292330-1|CAL23142.2|  408|Tribolium castaneum gustatory recept...    29   0.042
U14732-1|AAC46491.1|  322|Tribolium castaneum fushi-tarazu protein.    23   2.8  
AY043292-2|AAK96032.1|  290|Tribolium castaneum homeodomain tran...    23   2.8  
AF321227-1|AAK16421.1|  290|Tribolium castaneum Ftz protein.           23   2.8  
EF127808-1|ABL67945.1|  311|Tribolium castaneum nicotinic acetyl...    22   6.4  
EF127807-1|ABL67944.1|  311|Tribolium castaneum nicotinic acetyl...    22   6.4  
AY695256-1|AAW21973.1|  168|Tribolium castaneum ventral nerve co...    22   6.4  
AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor ...    22   6.4  

>AM292330-1|CAL23142.2|  408|Tribolium castaneum gustatory receptor
           candidate 9 protein.
          Length = 408

 Score = 29.1 bits (62), Expect = 0.042
 Identities = 23/90 (25%), Positives = 39/90 (43%), Gaps = 1/90 (1%)
 Frame = +2

Query: 299 VVEQEQQLTLK*QHNLLLHNWSCSAYILDVLYQ*KLLPHC*NECYFAIKAI*GLLWFWEV 478
           V  ++  + L   +N L H      ++LD      +L    N  YF I  +    +  + 
Sbjct: 258 VTSEKSWIALNDDYNRLCH----LCFLLDEKLSYIILTSFLNNFYFIIFQVFESFYLHKA 313

Query: 479 LT-EPVLIFTALSSWICR*ITICNHGIWIS 565
            T E V  F +L   I R +++C +G WI+
Sbjct: 314 TTLETVYYFISLGLLILRLVSVCFYGSWIN 343


>U14732-1|AAC46491.1|  322|Tribolium castaneum fushi-tarazu protein.
          Length = 322

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = +1

Query: 322 DTEMTTQSVASQLELQRLHTGRT 390
           DT+ T QSV S  +   LH   T
Sbjct: 241 DTKFTEQSVTSTFDFLSLHPAET 263


>AY043292-2|AAK96032.1|  290|Tribolium castaneum homeodomain
           transcription factor Fushitarazu protein.
          Length = 290

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = +1

Query: 322 DTEMTTQSVASQLELQRLHTGRT 390
           DT+ T QSV S  +   LH   T
Sbjct: 241 DTKFTEQSVTSTFDFLSLHPAET 263


>AF321227-1|AAK16421.1|  290|Tribolium castaneum Ftz protein.
          Length = 290

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = +1

Query: 322 DTEMTTQSVASQLELQRLHTGRT 390
           DT+ T QSV S  +   LH   T
Sbjct: 241 DTKFTEQSVTSTFDFLSLHPAET 263


>EF127808-1|ABL67945.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           3 protein.
          Length = 311

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 9/28 (32%), Positives = 16/28 (57%)
 Frame = -3

Query: 334 SFQCQLLFLLHNNTCWMLSSGFFGSFCR 251
           +FQ  ++ + HN +C  +  G F S C+
Sbjct: 103 TFQTNVV-VKHNGSCLYVPPGIFKSTCK 129


>EF127807-1|ABL67944.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           2 protein.
          Length = 311

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 9/28 (32%), Positives = 16/28 (57%)
 Frame = -3

Query: 334 SFQCQLLFLLHNNTCWMLSSGFFGSFCR 251
           +FQ  ++ + HN +C  +  G F S C+
Sbjct: 103 TFQTNVV-VKHNGSCLYVPPGIFKSTCK 129


>AY695256-1|AAW21973.1|  168|Tribolium castaneum ventral nerve cord
           defective protein protein.
          Length = 168

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 8/12 (66%), Positives = 10/12 (83%)
 Frame = -3

Query: 589 ASNTAIAARDPD 554
           ASN A++ RDPD
Sbjct: 7   ASNPAVSERDPD 18


>AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor
           protein protein.
          Length = 585

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 8/24 (33%), Positives = 12/24 (50%)
 Frame = -3

Query: 235 SGSCVSS*NNAVCVYYTNNCSTGL 164
           +G C    N   C +  N+CS G+
Sbjct: 499 NGRCDEECNTYACEFDGNDCSLGI 522


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 187,532
Number of Sequences: 336
Number of extensions: 4294
Number of successful extensions: 15
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 21168876
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)