Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30589
(783 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_01_0588 + 5278013-5278153,5278641-5278782,5278923-5279019,527... 142 3e-34
06_01_0285 - 2090427-2090558,2091045-2091119,2091334-2091407,209... 50 2e-06
02_05_0884 - 32483735-32483866,32484417-32484491,32484707-324847... 50 3e-06
05_05_0306 - 23977543-23977614,23977709-23977799,23978296-239783... 33 0.34
09_04_0728 - 19771975-19772093,19772131-19772224,19772322-197725... 31 0.78
01_06_1091 + 34464923-34465026,34465124-34465163,34465245-344653... 29 4.2
01_06_0918 + 32990106-32992196 29 5.5
11_06_0394 - 23084485-23084577,23084677-23084802,23085134-230852... 28 9.6
10_08_0190 + 15607241-15607409,15607932-15607990,15608883-156089... 28 9.6
09_02_0479 - 9753161-9753171,9755260-9755547,9755883-9756222 28 9.6
>05_01_0588 +
5278013-5278153,5278641-5278782,5278923-5279019,
5279130-5279199,5279284-5279388,5279531-5279629,
5280062-5280152,5280238-5280311
Length = 272
Score = 142 bits (344), Expect = 3e-34
Identities = 78/153 (50%), Positives = 96/153 (62%), Gaps = 3/153 (1%)
Frame = +1
Query: 256 KNCQKIHYLASNMYCCGAGTAADTEMTTQSVASQLELQRLHTGRTVPVETAATLLKRMLF 435
KNC+KIHY+A N+YCCGAGTAADTE T V+SQL+L R TGR V T+ TLLK LF
Sbjct: 67 KNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYATGRESRVVTSLTLLKSHLF 126
Query: 436 RYQGHIGAALVLGGVDRTGPHIYCII---LMDL*INYHMQPWDLDLLRLWQCLKQVGNVI 606
YQGH+ AALVLGGVD TGPH++ + D M L + +++ + G
Sbjct: 127 SYQGHVSAALVLGGVDVTGPHLHTVYPHGSTDTLPFATMGSGSLAAMSVFESKYKEGLT- 185
Query: 607 *MRKKEKSLSEMLFAAGIFNDLGSGSNVDLCVI 705
R++ L GIFNDLGSGSNVD+CVI
Sbjct: 186 --REEGIQLVAEAIRGGIFNDLGSGSNVDVCVI 216
Score = 78.6 bits (185), Expect = 5e-15
Identities = 35/63 (55%), Positives = 45/63 (71%)
Frame = +2
Query: 83 PVPGFSFENFQRNAFLAQKGFPAPKATKTGTTIVGIIYADGVILGADTRATENTVVSAKT 262
P GFS++N RNA L +KG P KTGTTIVG+++ DGV+LGADTRATE +V+ K
Sbjct: 9 PKGGFSYDNCARNAMLVEKGLKMPGFLKTGTTIVGLVFQDGVVLGADTRATEGPIVADKN 68
Query: 263 AKK 271
+K
Sbjct: 69 CEK 71
Score = 66.9 bits (156), Expect = 2e-11
Identities = 30/46 (65%), Positives = 37/46 (80%)
Frame = +3
Query: 510 YPHGSVDKLPYATMGSGSLAAMAVFEAGWKRDMNEEEGKKLVRDAI 647
YPHGS D LP+ATMGSGSLAAM+VFE+ +K + EEG +LV +AI
Sbjct: 152 YPHGSTDTLPFATMGSGSLAAMSVFESKYKEGLTREEGIQLVAEAI 197
>06_01_0285 -
2090427-2090558,2091045-2091119,2091334-2091407,
2091792-2091903,2092036-2092108,2092291-2092346,
2092679-2092755,2093384-2093525
Length = 246
Score = 50.4 bits (115), Expect = 2e-06
Identities = 25/84 (29%), Positives = 48/84 (57%), Gaps = 1/84 (1%)
Frame = +1
Query: 268 KIHYLASNMYCCGAGTAADTEMTTQSVASQLELQRLHTGRTVPVETAATLLKRMLFRYQG 447
KI L N+Y C +G+AADT++ ++ V L + G+ V+ AA L++ + ++ +
Sbjct: 58 KITQLTDNVYVCRSGSAADTQVISEYVRYFLHQHTIQLGQPATVKVAANLIRLLAYQNKN 117
Query: 448 HIGAALVLGGVDR-TGPHIYCIIL 516
+ A +++GG D+ G I+ + L
Sbjct: 118 MLQAGMIVGGWDKYEGGQIFSVPL 141
Score = 37.1 bits (82), Expect = 0.016
Identities = 17/44 (38%), Positives = 25/44 (56%)
Frame = +2
Query: 146 PAPKATKTGTTIVGIIYADGVILGADTRATENTVVSAKTAKKST 277
P + GTTIVG+ Y GV+L AD+R + V+ + + K T
Sbjct: 17 PTSGEHRMGTTIVGVCYDGGVVLAADSRTSTGMYVANRASDKIT 60
Score = 33.1 bits (72), Expect = 0.26
Identities = 14/39 (35%), Positives = 23/39 (58%)
Frame = +3
Query: 519 GSVDKLPYATMGSGSLAAMAVFEAGWKRDMNEEEGKKLV 635
G++ + P+A GSGS + + WK M++EE +K V
Sbjct: 143 GTILRQPFAIGGSGSSYLYGLLDHEWKEGMSQEEAEKFV 181
>02_05_0884 -
32483735-32483866,32484417-32484491,32484707-32484780,
32485180-32485291,32485476-32485548,32485674-32485729,
32486046-32486122,32486799-32486940
Length = 246
Score = 49.6 bits (113), Expect = 3e-06
Identities = 25/84 (29%), Positives = 47/84 (55%), Gaps = 1/84 (1%)
Frame = +1
Query: 268 KIHYLASNMYCCGAGTAADTEMTTQSVASQLELQRLHTGRTVPVETAATLLKRMLFRYQG 447
KI L N+Y C +G+AADT++ + V L + G+ V+ AA L++ + ++ +
Sbjct: 58 KITQLTDNVYICRSGSAADTQVISDYVRYFLHQHTIQLGQPATVKVAANLIRLLAYQNKN 117
Query: 448 HIGAALVLGGVDR-TGPHIYCIIL 516
+ A +++GG D+ G I+ + L
Sbjct: 118 MLQAGMIVGGWDKYEGGQIFSVPL 141
Score = 37.1 bits (82), Expect = 0.016
Identities = 17/44 (38%), Positives = 25/44 (56%)
Frame = +2
Query: 146 PAPKATKTGTTIVGIIYADGVILGADTRATENTVVSAKTAKKST 277
P + GTTIVG+ Y GV+L AD+R + V+ + + K T
Sbjct: 17 PTSGEHRMGTTIVGVCYDGGVVLAADSRTSTGMYVANRASDKIT 60
Score = 33.1 bits (72), Expect = 0.26
Identities = 14/39 (35%), Positives = 23/39 (58%)
Frame = +3
Query: 519 GSVDKLPYATMGSGSLAAMAVFEAGWKRDMNEEEGKKLV 635
G++ + P+A GSGS + + WK M++EE +K V
Sbjct: 143 GTILRQPFAIGGSGSSYLYGLLDHEWKEGMSQEEAEKFV 181
>05_05_0306 -
23977543-23977614,23977709-23977799,23978296-23978361,
23978399-23978479,23979130-23979176,23979408-23979492,
23979570-23979656,23979728-23979801,23980083-23980166,
23980259-23980298,23980386-23980489
Length = 276
Score = 32.7 bits (71), Expect = 0.34
Identities = 24/91 (26%), Positives = 38/91 (41%), Gaps = 5/91 (5%)
Frame = +1
Query: 253 GKNCQKIHYLASNMYCCGAGTAADTEMTTQSVASQLELQRLHTGRTVPVETAATLLKRM- 429
G N +++H + + AG AAD S+ G +PV+ A +
Sbjct: 62 GSN-RRLHSVHRHSGLAVAGLAADGRQIVSRAKSEAASYEKVYGEPMPVKELADRVASYV 120
Query: 430 ----LFRYQGHIGAALVLGGVDRTGPHIYCI 510
L+ + G ++LGG DR GP +Y I
Sbjct: 121 HLCTLYWWLRPFGCGVILGGYDRDGPQLYMI 151
Score = 28.3 bits (60), Expect = 7.3
Identities = 12/40 (30%), Positives = 19/40 (47%)
Frame = +2
Query: 149 APKATKTGTTIVGIIYADGVILGADTRATENTVVSAKTAK 268
A KA T+VGI DG++LG + T ++ +
Sbjct: 27 AGKAVDNSGTVVGIKCKDGIVLGVEKLVTSKMILKGSNRR 66
>09_04_0728 -
19771975-19772093,19772131-19772224,19772322-19772507,
19772596-19772767,19772854-19772983,19773060-19773136,
19774109-19774194,19774508-19774585,19775916-19776045,
19776379-19776423,19776508-19776618,19776801-19777057,
19777153-19777302,19777899-19778008,19778426-19778546
Length = 621
Score = 31.5 bits (68), Expect = 0.78
Identities = 12/35 (34%), Positives = 24/35 (68%)
Frame = +2
Query: 167 TGTTIVGIIYADGVILGADTRATENTVVSAKTAKK 271
TG++I+ + Y DGVI+ +DT A+ + + K+ ++
Sbjct: 368 TGSSIIALKYKDGVIMASDTGASYGSTLRYKSVER 402
>01_06_1091 +
34464923-34465026,34465124-34465163,34465245-34465328,
34465457-34465480,34465582-34465655,34465726-34465812,
34465922-34466006,34466215-34466261,34467048-34467113,
34468307-34468397,34468477-34468548
Length = 257
Score = 29.1 bits (62), Expect = 4.2
Identities = 20/73 (27%), Positives = 29/73 (39%), Gaps = 5/73 (6%)
Frame = +1
Query: 307 AGTAADTEMTTQSVASQLELQRLHTGRTVPVETAATLLKRM-----LFRYQGHIGAALVL 471
AG AAD S+ G + V+ A + L+ + G ++L
Sbjct: 87 AGLAADGRQIVSRAKSEAASYEKVYGEPISVKELADRVASYVHLCTLYWWLRPFGCGVIL 146
Query: 472 GGVDRTGPHIYCI 510
GG DR GP +Y I
Sbjct: 147 GGYDRDGPQLYMI 159
Score = 27.9 bits (59), Expect = 9.6
Identities = 12/40 (30%), Positives = 19/40 (47%)
Frame = +2
Query: 149 APKATKTGTTIVGIIYADGVILGADTRATENTVVSAKTAK 268
A KA T+VGI DG++LG + T ++ +
Sbjct: 27 ATKAVDNSGTVVGIKCKDGIVLGVEKLVTSKMMLEGSNRR 66
>01_06_0918 + 32990106-32992196
Length = 696
Score = 28.7 bits (61), Expect = 5.5
Identities = 22/70 (31%), Positives = 28/70 (40%), Gaps = 3/70 (4%)
Frame = +3
Query: 411 HTAETNAISLSRPYRGCSGFGRC*QNRSSYLLHY---PHGSVDKLPYATMGSGSLAAMAV 581
+ AE IS R G C ++R +LL Y P+GSVD+ Y G A A
Sbjct: 393 YAAEVRIISQLRHRHLVRLVGWCHEHRGDFLLVYELMPNGSVDRHLYGGGGGSKKAGGAA 452
Query: 582 FEAGWKRDMN 611
W N
Sbjct: 453 PPLSWPTRYN 462
>11_06_0394 -
23084485-23084577,23084677-23084802,23085134-23085236,
23085895-23085953,23086418-23086519,23086601-23086714,
23087666-23087746,23088073-23088154,23088504-23088556
Length = 270
Score = 27.9 bits (59), Expect = 9.6
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = +2
Query: 149 APKATKTGTTIVGIIYADGVILGADTRAT 235
A +A K G+T +G+ DGV+L + R T
Sbjct: 40 AIEAIKLGSTAIGLKTKDGVVLAVEKRVT 68
>10_08_0190 +
15607241-15607409,15607932-15607990,15608883-15608991,
15609394-15609551,15609976-15610044,15610158-15610847,
15611112-15611629,15611725-15611789,15613010-15613089,
15613894-15613998,15614768-15614881,15615029-15615168,
15615257-15615385,15615903-15616055,15616186-15616327
Length = 899
Score = 27.9 bits (59), Expect = 9.6
Identities = 13/37 (35%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
Frame = -3
Query: 256 CRDNCIFSGSCVSS*NNAVCVYYT-NNCSTGLGGFGC 149
C NC G+C SS + + +Y+ C GGF C
Sbjct: 568 CHKNCNQKGACHSSIDESGLTFYSFCTCDRDHGGFDC 604
>09_02_0479 - 9753161-9753171,9755260-9755547,9755883-9756222
Length = 212
Score = 27.9 bits (59), Expect = 9.6
Identities = 10/20 (50%), Positives = 15/20 (75%)
Frame = -2
Query: 419 SSVAAVSTGTVRPVCKRCNS 360
S V +V+T T+RP+C RC +
Sbjct: 79 SPVESVTTATLRPICFRCTN 98
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,138,167
Number of Sequences: 37544
Number of extensions: 457338
Number of successful extensions: 1082
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1043
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1082
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2103658836
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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