Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30589
         (783 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_55640| Best HMM Match : No HMM Matches (HMM E-Value=.)              45   6e-05
SB_10931| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.46 
SB_2420| Best HMM Match : GSH_synthase (HMM E-Value=7.9)               31   1.4  
SB_22053| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.8  
SB_44417| Best HMM Match : RdRP_2 (HMM E-Value=5.6)                    29   3.2  
SB_50916| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.2  
SB_48652| Best HMM Match : RVT_1 (HMM E-Value=0.0009)                  29   5.6  
SB_8505| Best HMM Match : CitD (HMM E-Value=0.91)                      28   9.8  

>SB_55640| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1071

 Score = 45.2 bits (102), Expect = 6e-05
 Identities = 22/34 (64%), Positives = 24/34 (70%)
 Frame = +1

Query: 616 KKEKSLSEMLFAAGIFNDLGSGSNVDLCVIRNTG 717
           ++ K L     AAGIFNDLGSGSNVDLCVI   G
Sbjct: 2   EEAKQLVRDGIAAGIFNDLGSGSNVDLCVITKDG 35


>SB_10931| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 467

 Score = 32.3 bits (70), Expect = 0.46
 Identities = 13/34 (38%), Positives = 22/34 (64%)
 Frame = +2

Query: 170 GTTIVGIIYADGVILGADTRATENTVVSAKTAKK 271
           GTT +   +  GVI+  D+RAT  + ++++T KK
Sbjct: 28  GTTTLAFKFKHGVIVAVDSRATAGSYIASQTVKK 61



 Score = 29.1 bits (62), Expect = 4.2
 Identities = 13/29 (44%), Positives = 19/29 (65%)
 Frame = +3

Query: 546 TMGSGSLAAMAVFEAGWKRDMNEEEGKKL 632
           ++GSGS  A  V ++G+K DM+ EE   L
Sbjct: 181 SVGSGSTYAYGVMDSGYKYDMSPEEAYDL 209


>SB_2420| Best HMM Match : GSH_synthase (HMM E-Value=7.9)
          Length = 343

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 16/47 (34%), Positives = 27/47 (57%)
 Frame = +3

Query: 522 SVDKLPYATMGSGSLAAMAVFEAGWKRDMNEEEGKKLVRDAICCWYI 662
           +V  LP  T+G+    ++ +    W+ D +E EG+   RDA+CC Y+
Sbjct: 195 TVATLPQFTLGNRYACSVVL---SWRYDFSELEGE---RDAMCCGYV 235


>SB_22053| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1670

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 18/45 (40%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
 Frame = +1

Query: 322 DTEMTTQSVASQLELQRLHT--GRTVPVETAATLLKRMLFRYQGH 450
           D +     V S  E+ RLHT  GR+ PVE    LLK+ L + + H
Sbjct: 250 DKKDEDSKVMSSQEVSRLHTPQGRSTPVEPHLQLLKQALKQVKPH 294


>SB_44417| Best HMM Match : RdRP_2 (HMM E-Value=5.6)
          Length = 541

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 19/41 (46%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
 Frame = +3

Query: 411 HTAETN-AISLSRPYRG-CSGFGRC*QNRSSYLLHYPHGSV 527
           HTA    A++ S  Y G CS F  C +  SSYLL    GSV
Sbjct: 187 HTAMRECALTFSHRYEGVCSYFSHCYEGVSSYLLTPLRGSV 227


>SB_50916| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1681

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 13/24 (54%), Positives = 18/24 (75%)
 Frame = +1

Query: 301 CGAGTAADTEMTTQSVASQLELQR 372
           C  GTAA T +T QSVAS ++++R
Sbjct: 637 CKRGTAALTNVTKQSVASVVDIER 660


>SB_48652| Best HMM Match : RVT_1 (HMM E-Value=0.0009)
          Length = 938

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 11/22 (50%), Positives = 17/22 (77%)
 Frame = +2

Query: 161 TKTGTTIVGIIYADGVILGADT 226
           T TGT+++GI +  GV++ ADT
Sbjct: 872 TTTGTSVLGIKFNGGVLMAADT 893


>SB_8505| Best HMM Match : CitD (HMM E-Value=0.91)
          Length = 909

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 17/71 (23%), Positives = 29/71 (40%), Gaps = 3/71 (4%)
 Frame = +1

Query: 265 QKIHYLAS-NMYCCGAGTAADTEMTTQSVASQLELQR--LHTGRTVPVETAATLLKRMLF 435
           QK+H +      CC        +         LE+    +H+G  +PVE    L+  +L 
Sbjct: 82  QKLHLVYEITALCCAFNPKNLLQKVVDLCVESLEMYNGDVHSGDGLPVEVTLDLVNYLLK 141

Query: 436 RYQGHIGAALV 468
           +  GH G  ++
Sbjct: 142 QESGHDGVTML 152


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,852,767
Number of Sequences: 59808
Number of extensions: 504326
Number of successful extensions: 1321
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1233
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1321
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2143884611
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)