Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30589
         (783 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholi...    21   9.8  
DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholi...    21   9.8  
DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholi...    21   9.8  
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    21   9.8  

>EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 1 protein.
          Length = 461

 Score = 21.4 bits (43), Expect = 9.8
 Identities = 7/18 (38%), Positives = 10/18 (55%)
 Frame = -3

Query: 304 HNNTCWMLSSGFFGSFCR 251
           HN +C  +  G F S C+
Sbjct: 95  HNGSCLYVPPGIFKSTCK 112


>DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 21.4 bits (43), Expect = 9.8
 Identities = 7/18 (38%), Positives = 10/18 (55%)
 Frame = -3

Query: 304 HNNTCWMLSSGFFGSFCR 251
           HN +C  +  G F S C+
Sbjct: 163 HNGSCLYVPPGIFKSTCK 180


>DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 21.4 bits (43), Expect = 9.8
 Identities = 7/18 (38%), Positives = 10/18 (55%)
 Frame = -3

Query: 304 HNNTCWMLSSGFFGSFCR 251
           HN +C  +  G F S C+
Sbjct: 163 HNGSCLYVPPGIFKSTCK 180


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 21.4 bits (43), Expect = 9.8
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = -1

Query: 531 YLQIHEDNAVNMRTGSVNTSQNQSSPYMA 445
           Y  I ED+A ++   SV  S+N    Y++
Sbjct: 416 YKNIREDDARHIPHASVTDSENTVPRYLS 444


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 219,847
Number of Sequences: 438
Number of extensions: 4647
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24639531
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)