Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30588
(734 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_56628| Best HMM Match : Actin (HMM E-Value=0) 171 5e-43
SB_23733| Best HMM Match : No HMM Matches (HMM E-Value=.) 167 1e-41
SB_7187| Best HMM Match : No HMM Matches (HMM E-Value=.) 167 1e-41
SB_56| Best HMM Match : Actin (HMM E-Value=0) 165 3e-41
SB_7190| Best HMM Match : No HMM Matches (HMM E-Value=.) 164 8e-41
SB_23734| Best HMM Match : No HMM Matches (HMM E-Value=.) 124 1e-28
SB_19204| Best HMM Match : No HMM Matches (HMM E-Value=.) 70 2e-12
SB_34957| Best HMM Match : PARP (HMM E-Value=4.4e-12) 60 2e-09
SB_54| Best HMM Match : Actin (HMM E-Value=0) 60 2e-09
SB_49385| Best HMM Match : Actin (HMM E-Value=0.00022) 53 3e-07
SB_27656| Best HMM Match : Actin (HMM E-Value=4.79999e-40) 50 2e-06
SB_3885| Best HMM Match : Actin (HMM E-Value=0.77) 46 2e-05
SB_43920| Best HMM Match : SRP-alpha_N (HMM E-Value=4.6) 46 4e-05
SB_6996| Best HMM Match : Actin (HMM E-Value=1.7e-07) 43 3e-04
SB_13343| Best HMM Match : No HMM Matches (HMM E-Value=.) 42 5e-04
SB_47112| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.14
SB_18097| Best HMM Match : NadA (HMM E-Value=2.2) 33 0.24
SB_47621| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.32
SB_21074| Best HMM Match : NadA (HMM E-Value=2) 33 0.32
SB_15522| Best HMM Match : DUF590 (HMM E-Value=5.8) 33 0.32
SB_38460| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.32
SB_38372| Best HMM Match : RVT_1 (HMM E-Value=0) 33 0.32
SB_2458| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.32
SB_42487| Best HMM Match : Extensin_2 (HMM E-Value=0.084) 32 0.42
SB_4310| Best HMM Match : RVT_1 (HMM E-Value=5e-28) 32 0.42
SB_38756| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.73
SB_37540| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.73
SB_5400| Best HMM Match : DUF1153 (HMM E-Value=7.8) 31 0.73
SB_56449| Best HMM Match : RVT_1 (HMM E-Value=0.28) 30 1.7
SB_35780| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.7
SB_10843| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.7
SB_2746| Best HMM Match : RVT_1 (HMM E-Value=1.10002e-42) 30 1.7
SB_2102| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.7
SB_55880| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.7
SB_24270| Best HMM Match : DUF1604 (HMM E-Value=5.2) 30 1.7
SB_11764| Best HMM Match : DSHCT (HMM E-Value=1.9e-27) 30 1.7
SB_10927| Best HMM Match : RVT_1 (HMM E-Value=6.6e-39) 30 1.7
SB_5114| Best HMM Match : RVT_1 (HMM E-Value=1.10002e-42) 30 1.7
SB_28979| Best HMM Match : RVT_1 (HMM E-Value=1.6e-40) 30 2.2
SB_10917| Best HMM Match : SPRY (HMM E-Value=1.4e-17) 30 2.2
SB_19940| Best HMM Match : Drf_FH1 (HMM E-Value=0.97) 30 2.2
SB_43973| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.0
SB_12978| Best HMM Match : Flavodoxin_1 (HMM E-Value=3.8e-24) 29 3.9
SB_56940| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.9
SB_3433| Best HMM Match : Actin (HMM E-Value=0.00011) 29 3.9
SB_44703| Best HMM Match : Extensin_2 (HMM E-Value=0.077) 29 5.2
SB_20462| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.8
SB_11603| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.8
>SB_56628| Best HMM Match : Actin (HMM E-Value=0)
Length = 376
Score = 171 bits (416), Expect = 5e-43
Identities = 90/149 (60%), Positives = 97/149 (65%)
Frame = +3
Query: 78 MCDEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAR 257
MCD++VAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEA+
Sbjct: 1 MCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60
Query: 258 AKXXXXXXXXXXXXXXXLTGMTWRRFGIIPSTMTCVSPPRNTQSCSLRLPSTPRPTGEKM 437
+K + P P P+ EKM
Sbjct: 61 SKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKM 120
Query: 438 TQIMFETFNTPAMYVAIQAVLSL*TSGRT 524
TQIMFETFN+PAMYVAIQAVLSL SGRT
Sbjct: 121 TQIMFETFNSPAMYVAIQAVLSLYASGRT 149
Score = 130 bits (314), Expect = 1e-30
Identities = 56/60 (93%), Positives = 59/60 (98%)
Frame = +2
Query: 254 KSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNDLRVAPEEHPVLLTEAPLNPKANRRE 433
+SKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYN+LRVAPEEHPVLLTEAPLNPKANR +
Sbjct: 60 QSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREK 119
>SB_23733| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 376
Score = 167 bits (405), Expect = 1e-41
Identities = 89/149 (59%), Positives = 96/149 (64%)
Frame = +3
Query: 78 MCDEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAR 257
M D+E+AALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEA+
Sbjct: 1 MEDDEIAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60
Query: 258 AKXXXXXXXXXXXXXXXLTGMTWRRFGIIPSTMTCVSPPRNTQSCSLRLPSTPRPTGEKM 437
+K + P P P+ EKM
Sbjct: 61 SKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKM 120
Query: 438 TQIMFETFNTPAMYVAIQAVLSL*TSGRT 524
TQIMFETFN+PAMYVAIQAVLSL SGRT
Sbjct: 121 TQIMFETFNSPAMYVAIQAVLSLYASGRT 149
Score = 130 bits (314), Expect = 1e-30
Identities = 56/60 (93%), Positives = 59/60 (98%)
Frame = +2
Query: 254 KSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNDLRVAPEEHPVLLTEAPLNPKANRRE 433
+SKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYN+LRVAPEEHPVLLTEAPLNPKANR +
Sbjct: 60 QSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREK 119
>SB_7187| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 349
Score = 167 bits (405), Expect = 1e-41
Identities = 87/149 (58%), Positives = 96/149 (64%)
Frame = +3
Query: 78 MCDEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAR 257
M D+++AALV+DNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEA+
Sbjct: 1 MADDDIAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60
Query: 258 AKXXXXXXXXXXXXXXXLTGMTWRRFGIIPSTMTCVSPPRNTQSCSLRLPSTPRPTGEKM 437
+K + P P P+ EKM
Sbjct: 61 SKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKM 120
Query: 438 TQIMFETFNTPAMYVAIQAVLSL*TSGRT 524
TQIMFETFN+PAMYVAIQAVLSL SGRT
Sbjct: 121 TQIMFETFNSPAMYVAIQAVLSLYASGRT 149
Score = 130 bits (314), Expect = 1e-30
Identities = 56/60 (93%), Positives = 59/60 (98%)
Frame = +2
Query: 254 KSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNDLRVAPEEHPVLLTEAPLNPKANRRE 433
+SKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYN+LRVAPEEHPVLLTEAPLNPKANR +
Sbjct: 60 QSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREK 119
>SB_56| Best HMM Match : Actin (HMM E-Value=0)
Length = 375
Score = 165 bits (401), Expect = 3e-41
Identities = 88/147 (59%), Positives = 95/147 (64%)
Frame = +3
Query: 84 DEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEARAK 263
++EVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEA++K
Sbjct: 2 EDEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK 61
Query: 264 XXXXXXXXXXXXXXXLTGMTWRRFGIIPSTMTCVSPPRNTQSCSLRLPSTPRPTGEKMTQ 443
+ P P P+ EKMTQ
Sbjct: 62 RGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQ 121
Query: 444 IMFETFNTPAMYVAIQAVLSL*TSGRT 524
IMFETFN+PAMYVAIQAVLSL SGRT
Sbjct: 122 IMFETFNSPAMYVAIQAVLSLYASGRT 148
Score = 130 bits (314), Expect = 1e-30
Identities = 56/60 (93%), Positives = 59/60 (98%)
Frame = +2
Query: 254 KSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNDLRVAPEEHPVLLTEAPLNPKANRRE 433
+SKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYN+LRVAPEEHPVLLTEAPLNPKANR +
Sbjct: 59 QSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREK 118
>SB_7190| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 375
Score = 164 bits (398), Expect = 8e-41
Identities = 87/147 (59%), Positives = 95/147 (64%)
Frame = +3
Query: 84 DEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEARAK 263
+++VAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEA++K
Sbjct: 2 EDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK 61
Query: 264 XXXXXXXXXXXXXXXLTGMTWRRFGIIPSTMTCVSPPRNTQSCSLRLPSTPRPTGEKMTQ 443
+ P P P+ EKMTQ
Sbjct: 62 RGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQ 121
Query: 444 IMFETFNTPAMYVAIQAVLSL*TSGRT 524
IMFETFN+PAMYVAIQAVLSL SGRT
Sbjct: 122 IMFETFNSPAMYVAIQAVLSLYASGRT 148
Score = 130 bits (314), Expect = 1e-30
Identities = 56/60 (93%), Positives = 59/60 (98%)
Frame = +2
Query: 254 KSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNDLRVAPEEHPVLLTEAPLNPKANRRE 433
+SKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYN+LRVAPEEHPVLLTEAPLNPKANR +
Sbjct: 59 QSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREK 118
>SB_23734| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 338
Score = 124 bits (298), Expect = 1e-28
Identities = 55/60 (91%), Positives = 60/60 (100%)
Frame = +3
Query: 84 DEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEARAK 263
D++VAALV+DNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEA++K
Sbjct: 2 DDDVAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK 61
Score = 64.5 bits (150), Expect = 8e-11
Identities = 28/32 (87%), Positives = 29/32 (90%)
Frame = +2
Query: 254 KSKRGILTLKYPIEHGIVTNWDDMEKIWHHTF 349
+SKRGILTLKYPIEHGIVTNWDDMEKI TF
Sbjct: 59 QSKRGILTLKYPIEHGIVTNWDDMEKIMFETF 90
Score = 52.4 bits (120), Expect = 4e-07
Identities = 25/32 (78%), Positives = 28/32 (87%)
Frame = +3
Query: 429 EKMTQIMFETFNTPAMYVAIQAVLSL*TSGRT 524
+ M +IMFETFN+PAMYVAIQAVLSL SGRT
Sbjct: 80 DDMEKIMFETFNSPAMYVAIQAVLSLYASGRT 111
>SB_19204| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 411
Score = 69.7 bits (163), Expect = 2e-12
Identities = 48/146 (32%), Positives = 66/146 (45%), Gaps = 5/146 (3%)
Frame = +3
Query: 96 AALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRP--RHQGVMVGMGQKDSYVGDEARAKXX 269
+ +V DNG+G K G+AG + P +FPS+VGRP R + + KD VGDEA
Sbjct: 7 SVIVCDNGTGFVKCGYAGSNFPAHIFPSMVGRPIIRSSQKVGDIEVKDLMVGDEASQLRY 66
Query: 270 XXXXXXXXXXXXXLTGMTWRR---FGIIPSTMTCVSPPRNTQSCSLRLPSTPRPTGEKMT 440
+ + S M PRNT+ P P EKM
Sbjct: 67 MLEVNYPMDNGIVRNWDDMKHVWDYTFGESKMNI--DPRNTKVLLTEPPLNPMKNREKMI 124
Query: 441 QIMFETFNTPAMYVAIQAVLSL*TSG 518
++MFE + +Y+AIQAVL+L G
Sbjct: 125 EVMFENYQFEGVYIAIQAVLTLYAQG 150
Score = 63.3 bits (147), Expect = 2e-10
Identities = 27/58 (46%), Positives = 39/58 (67%), Gaps = 1/58 (1%)
Frame = +2
Query: 263 RGILTLKYPIEHGIVTNWDDMEKIWHHTF-YNDLRVAPEEHPVLLTEAPLNPKANRRE 433
R +L + YP+++GIV NWDDM+ +W +TF + + + P VLLTE PLNP NR +
Sbjct: 65 RYMLEVNYPMDNGIVRNWDDMKHVWDYTFGESKMNIDPRNTKVLLTEPPLNPMKNREK 122
>SB_34957| Best HMM Match : PARP (HMM E-Value=4.4e-12)
Length = 1392
Score = 59.7 bits (138), Expect = 2e-09
Identities = 27/39 (69%), Positives = 29/39 (74%)
Frame = +3
Query: 87 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQ 203
E LV+D GS M K GFAGDDAP+ VFP IVGRPRHQ
Sbjct: 1354 EAPTPLVIDVGSHMWKVGFAGDDAPKGVFPPIVGRPRHQ 1392
>SB_54| Best HMM Match : Actin (HMM E-Value=0)
Length = 2486
Score = 59.7 bits (138), Expect = 2e-09
Identities = 23/34 (67%), Positives = 30/34 (88%)
Frame = +3
Query: 102 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQ 203
+V+DNGSG CKAG + D++PR VFP+IVGRPRH+
Sbjct: 2097 VVIDNGSGFCKAGLSTDESPRVVFPAIVGRPRHK 2130
Score = 54.0 bits (124), Expect = 1e-07
Identities = 23/40 (57%), Positives = 30/40 (75%)
Frame = +3
Query: 405 PSTPRPTGEKMTQIMFETFNTPAMYVAIQAVLSL*TSGRT 524
P P+ E+M Q+MFE+FN P MYVA+QAV++L SGRT
Sbjct: 2154 PLNPKMNRERMVQLMFESFNVPCMYVAVQAVMALYASGRT 2193
Score = 48.0 bits (109), Expect = 8e-06
Identities = 22/33 (66%), Positives = 25/33 (75%)
Frame = +2
Query: 329 KIWHHTFYNDLRVAPEEHPVLLTEAPLNPKANR 427
K+W H F + LRV E+ PVLLTEAPLNPK NR
Sbjct: 2130 KMWEHAF-DQLRVRGEDFPVLLTEAPLNPKMNR 2161
>SB_49385| Best HMM Match : Actin (HMM E-Value=0.00022)
Length = 921
Score = 52.8 bits (121), Expect = 3e-07
Identities = 28/67 (41%), Positives = 40/67 (59%), Gaps = 3/67 (4%)
Frame = +3
Query: 72 FKMCDEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVG--MGQKD-SYV 242
FK+ A+V+DNG G+ K GFAGD PR + P++VG P+ +++G + KD
Sbjct: 693 FKLDSHYNRAIVLDNGCGISKIGFAGDRVPRIIQPAVVGNPQRFSMLIGDNVNVKDYKKY 752
Query: 243 GDEARAK 263
GD A AK
Sbjct: 753 GDAAVAK 759
>SB_27656| Best HMM Match : Actin (HMM E-Value=4.79999e-40)
Length = 367
Score = 50.0 bits (114), Expect = 2e-06
Identities = 21/40 (52%), Positives = 29/40 (72%)
Frame = +3
Query: 405 PSTPRPTGEKMTQIMFETFNTPAMYVAIQAVLSL*TSGRT 524
P PR EK ++ FETFN PA+++++QAVLSL +GRT
Sbjct: 135 PLNPRRNREKAAEVFFETFNVPALFISMQAVLSLYATGRT 174
Score = 36.3 bits (80), Expect = 0.026
Identities = 14/19 (73%), Positives = 17/19 (89%)
Frame = +2
Query: 377 EHPVLLTEAPLNPKANRRE 433
+HPVLLTEAPLNP+ NR +
Sbjct: 126 QHPVLLTEAPLNPRRNREK 144
>SB_3885| Best HMM Match : Actin (HMM E-Value=0.77)
Length = 152
Score = 46.4 bits (105), Expect = 2e-05
Identities = 22/27 (81%), Positives = 24/27 (88%)
Frame = +3
Query: 444 IMFETFNTPAMYVAIQAVLSL*TSGRT 524
IMFE FN+PA+YVAIQAVLSL SGRT
Sbjct: 1 IMFEAFNSPAVYVAIQAVLSLYASGRT 27
>SB_43920| Best HMM Match : SRP-alpha_N (HMM E-Value=4.6)
Length = 372
Score = 45.6 bits (103), Expect = 4e-05
Identities = 18/38 (47%), Positives = 23/38 (60%)
Frame = +2
Query: 281 KYPIEHGIVTNWDDMEKIWHHTFYNDLRVAPEEHPVLL 394
K+PI H IV +WD ME+ W + LR PE+H LL
Sbjct: 299 KWPIRHAIVEDWDLMERFWEQCIFKYLRAEPEDHYFLL 336
>SB_6996| Best HMM Match : Actin (HMM E-Value=1.7e-07)
Length = 240
Score = 42.7 bits (96), Expect = 3e-04
Identities = 21/65 (32%), Positives = 37/65 (56%), Gaps = 2/65 (3%)
Frame = +3
Query: 429 EKMTQIMFETFNTPAMYVAIQAVLSL*TSGRTNR--YRAGTPATGVLPTNGGPILRKG*A 602
EK+T++MFE +N PA ++ +VL+ +GR+N +G T +P + G +L++
Sbjct: 50 EKLTELMFEKYNVPAFFLCKNSVLTAFANGRSNGLVIDSGATQTSAVPVHDGYVLQQAIV 109
Query: 603 LRPTA 617
P A
Sbjct: 110 RSPLA 114
Score = 37.9 bits (84), Expect = 0.008
Identities = 15/49 (30%), Positives = 29/49 (59%)
Frame = +2
Query: 287 PIEHGIVTNWDDMEKIWHHTFYNDLRVAPEEHPVLLTEAPLNPKANRRE 433
PI+ G++ +WD EKI + + +++ HP+L++EA N + R +
Sbjct: 3 PIKDGMIEDWDLFEKILDYIYSKNIKSDSALHPLLMSEAAWNTRIKREK 51
>SB_13343| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 198
Score = 41.9 bits (94), Expect = 5e-04
Identities = 21/39 (53%), Positives = 27/39 (69%)
Frame = -1
Query: 200 MAGPSHDRGEHGARSIISCETGLAHTGAIVYYQRGNFFV 84
MA + D GE+G+ SI+S ETGLAHTGAI+ Q + V
Sbjct: 1 MARSADDGGENGSGSIVSGETGLAHTGAIIDNQSCDIIV 39
>SB_47112| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 970
Score = 33.9 bits (74), Expect = 0.14
Identities = 23/83 (27%), Positives = 32/83 (38%), Gaps = 1/83 (1%)
Frame = +3
Query: 348 STMTCVSPPRNTQSCSLRLPSTPRPTGEKMTQIMFETFNTPAMYVAIQAVL-SL*TSGRT 524
+T+ P TQ + LPST +PT ++T F + P A L S T
Sbjct: 243 TTLPSTKQPTTTQQTTTTLPSTKQPTTPQLTTTTFPSTKQPTTTQQTTATLPSTKQPTTT 302
Query: 525 NRYRAGTPATGVLPTNGGPILRK 593
+ A P PT P R+
Sbjct: 303 QQTTATLPTPSTKPTTVSPTTRQ 325
>SB_18097| Best HMM Match : NadA (HMM E-Value=2.2)
Length = 272
Score = 33.1 bits (72), Expect = 0.24
Identities = 20/48 (41%), Positives = 23/48 (47%)
Frame = -1
Query: 266 LFCSCLISYIRVLLSHTDHHALMAGPSHDRGEHGARSIISCETGLAHT 123
L C C V+LSH + H M D +HG RS SCET L T
Sbjct: 213 LTCICCKVMEHVVLSHLNSHTAMNNILSDL-QHGFRSGFSCETQLVPT 259
>SB_47621| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 591
Score = 32.7 bits (71), Expect = 0.32
Identities = 20/48 (41%), Positives = 23/48 (47%)
Frame = -1
Query: 266 LFCSCLISYIRVLLSHTDHHALMAGPSHDRGEHGARSIISCETGLAHT 123
L C C V+LSH + H M D +HG RS SCET L T
Sbjct: 408 LTCICCKVMEHVVLSHLNSHTAMNNILSDL-QHGFRSGFSCETQLVLT 454
>SB_21074| Best HMM Match : NadA (HMM E-Value=2)
Length = 358
Score = 32.7 bits (71), Expect = 0.32
Identities = 20/48 (41%), Positives = 23/48 (47%)
Frame = -1
Query: 266 LFCSCLISYIRVLLSHTDHHALMAGPSHDRGEHGARSIISCETGLAHT 123
L C C V+LSH + H M D +HG RS SCET L T
Sbjct: 271 LTCICCKVMEHVVLSHLNSHTAMNNILSDL-QHGFRSGFSCETQLVLT 317
>SB_15522| Best HMM Match : DUF590 (HMM E-Value=5.8)
Length = 339
Score = 32.7 bits (71), Expect = 0.32
Identities = 20/48 (41%), Positives = 23/48 (47%)
Frame = -1
Query: 266 LFCSCLISYIRVLLSHTDHHALMAGPSHDRGEHGARSIISCETGLAHT 123
L C C V+LSH + H M D +HG RS SCET L T
Sbjct: 249 LTCICCKVMEHVVLSHLNSHTAMNNILSDL-QHGFRSGFSCETQLVLT 295
>SB_38460| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 181
Score = 32.7 bits (71), Expect = 0.32
Identities = 20/48 (41%), Positives = 23/48 (47%)
Frame = -1
Query: 266 LFCSCLISYIRVLLSHTDHHALMAGPSHDRGEHGARSIISCETGLAHT 123
L C C V+LSH + H M D +HG RS SCET L T
Sbjct: 91 LTCICCKVMEHVVLSHLNSHTAMNNILSDL-QHGFRSGFSCETQLVLT 137
>SB_38372| Best HMM Match : RVT_1 (HMM E-Value=0)
Length = 402
Score = 32.7 bits (71), Expect = 0.32
Identities = 20/48 (41%), Positives = 23/48 (47%)
Frame = -1
Query: 266 LFCSCLISYIRVLLSHTDHHALMAGPSHDRGEHGARSIISCETGLAHT 123
L C C V+LSH + H M D +HG RS SCET L T
Sbjct: 91 LTCICCKVMEHVVLSHLNSHTAMNNILSDL-QHGFRSGFSCETQLVLT 137
>SB_2458| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 458
Score = 32.7 bits (71), Expect = 0.32
Identities = 20/48 (41%), Positives = 23/48 (47%)
Frame = -1
Query: 266 LFCSCLISYIRVLLSHTDHHALMAGPSHDRGEHGARSIISCETGLAHT 123
L C C V+LSH + H M D +HG RS SCET L T
Sbjct: 125 LTCICCKVMEHVVLSHLNSHTAMNNILSDL-QHGFRSGFSCETQLVLT 171
>SB_42487| Best HMM Match : Extensin_2 (HMM E-Value=0.084)
Length = 635
Score = 32.3 bits (70), Expect = 0.42
Identities = 23/61 (37%), Positives = 30/61 (49%), Gaps = 3/61 (4%)
Frame = +1
Query: 460 STRPPCTSPSKPCSRCRRPVVP---TGIVLGLRRRVFSQPTVAPSYGRVKHSAPPQIPCD 630
S R CT PS+ S+ R P +P TG L R + SQ + PS G + + P P D
Sbjct: 505 SQRHVCTLPSRGISQTRHPSIPRDLTGAFTPLSRGI-SQAFITPSRG-ISKTFVPLHPAD 562
Query: 631 L 633
L
Sbjct: 563 L 563
>SB_4310| Best HMM Match : RVT_1 (HMM E-Value=5e-28)
Length = 570
Score = 32.3 bits (70), Expect = 0.42
Identities = 19/48 (39%), Positives = 23/48 (47%)
Frame = -1
Query: 266 LFCSCLISYIRVLLSHTDHHALMAGPSHDRGEHGARSIISCETGLAHT 123
L C C ++LSH + H M D +HG RS SCET L T
Sbjct: 173 LTCICCKVMEHIVLSHLNSHTAMNNILSDL-QHGFRSGFSCETQLVLT 219
>SB_38756| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 220
Score = 31.5 bits (68), Expect = 0.73
Identities = 17/59 (28%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
Frame = +2
Query: 278 LKYPIEHGIVTNWDDMEKIWHHTFYNDLRVAP--EEHPVLLTEAPLNPKANRREDDPDH 448
L+ P + +VT+++ E++ H F + P HPV++TE NP R+ + +H
Sbjct: 131 LRTPFDRDVVTHYECQEQVLDHAFSHLGINTPGGVNHPVIMTEPVCNPNYCRQCEHFNH 189
>SB_37540| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 120
Score = 31.5 bits (68), Expect = 0.73
Identities = 14/24 (58%), Positives = 16/24 (66%)
Frame = -2
Query: 175 GNTARGASSPAKPALHIPEPLSTT 104
GNT R PAKPAL++P P S T
Sbjct: 80 GNTNRRTRIPAKPALNLPSPPSKT 103
>SB_5400| Best HMM Match : DUF1153 (HMM E-Value=7.8)
Length = 170
Score = 31.5 bits (68), Expect = 0.73
Identities = 14/24 (58%), Positives = 16/24 (66%)
Frame = -2
Query: 175 GNTARGASSPAKPALHIPEPLSTT 104
GNT R PAKPAL++P P S T
Sbjct: 80 GNTNRRTRIPAKPALNLPSPPSKT 103
>SB_56449| Best HMM Match : RVT_1 (HMM E-Value=0.28)
Length = 419
Score = 30.3 bits (65), Expect = 1.7
Identities = 18/48 (37%), Positives = 23/48 (47%)
Frame = -1
Query: 266 LFCSCLISYIRVLLSHTDHHALMAGPSHDRGEHGARSIISCETGLAHT 123
L C C ++LSH + H L A +HG R +SCET L T
Sbjct: 242 LTCICCKIMEHIVLSHLNKH-LAANNILSIFQHGFRQALSCETQLVLT 288
>SB_35780| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 749
Score = 30.3 bits (65), Expect = 1.7
Identities = 13/24 (54%), Positives = 16/24 (66%)
Frame = -2
Query: 175 GNTARGASSPAKPALHIPEPLSTT 104
GNT R PAKP+L++P P S T
Sbjct: 540 GNTNRRTRIPAKPSLNLPSPPSKT 563
>SB_10843| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1259
Score = 30.3 bits (65), Expect = 1.7
Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Frame = +2
Query: 413 PKANRREDDPDHVRNIQHARHVRRHPSR-ALAVDVRSYQPVSCWDSGD 553
PK R D+P V A HV HPSR A + D Y+ + ++G+
Sbjct: 268 PKRCVRFDEPPTVEKYSKASHVTEHPSRNAESPDPEHYKEATAANNGN 315
>SB_2746| Best HMM Match : RVT_1 (HMM E-Value=1.10002e-42)
Length = 330
Score = 30.3 bits (65), Expect = 1.7
Identities = 18/48 (37%), Positives = 23/48 (47%)
Frame = -1
Query: 266 LFCSCLISYIRVLLSHTDHHALMAGPSHDRGEHGARSIISCETGLAHT 123
L C C ++LSH + H L A +HG R +SCET L T
Sbjct: 103 LTCICCKIMEHIVLSHLNKH-LAANNILSIFQHGFRQALSCETQLVLT 149
>SB_2102| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2396
Score = 30.3 bits (65), Expect = 1.7
Identities = 18/48 (37%), Positives = 23/48 (47%)
Frame = -1
Query: 266 LFCSCLISYIRVLLSHTDHHALMAGPSHDRGEHGARSIISCETGLAHT 123
L C C ++LSH + H L A +HG R +SCET L T
Sbjct: 1641 LTCICCKIMEHIVLSHLNKH-LAANNILSIFQHGFRQALSCETQLVLT 1687
>SB_55880| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 859
Score = 30.3 bits (65), Expect = 1.7
Identities = 18/48 (37%), Positives = 23/48 (47%)
Frame = -1
Query: 266 LFCSCLISYIRVLLSHTDHHALMAGPSHDRGEHGARSIISCETGLAHT 123
L C C ++LSH + H L A +HG R +SCET L T
Sbjct: 669 LTCICCKIMEHIVLSHLNKH-LAANNILSIFQHGFRQALSCETQLVLT 715
>SB_24270| Best HMM Match : DUF1604 (HMM E-Value=5.2)
Length = 329
Score = 30.3 bits (65), Expect = 1.7
Identities = 18/48 (37%), Positives = 23/48 (47%)
Frame = -1
Query: 266 LFCSCLISYIRVLLSHTDHHALMAGPSHDRGEHGARSIISCETGLAHT 123
L C C ++LSH + H L A +HG R +SCET L T
Sbjct: 224 LTCICCKIMEHIVLSHLNKH-LAANNILSIFQHGFRQALSCETQLVLT 270
>SB_11764| Best HMM Match : DSHCT (HMM E-Value=1.9e-27)
Length = 1492
Score = 30.3 bits (65), Expect = 1.7
Identities = 18/48 (37%), Positives = 23/48 (47%)
Frame = -1
Query: 266 LFCSCLISYIRVLLSHTDHHALMAGPSHDRGEHGARSIISCETGLAHT 123
L C C ++LSH + H L A +HG R +SCET L T
Sbjct: 1079 LTCICCKIMEHIVLSHLNKH-LAANNILSIFQHGFRQALSCETQLVLT 1125
>SB_10927| Best HMM Match : RVT_1 (HMM E-Value=6.6e-39)
Length = 452
Score = 30.3 bits (65), Expect = 1.7
Identities = 18/48 (37%), Positives = 23/48 (47%)
Frame = -1
Query: 266 LFCSCLISYIRVLLSHTDHHALMAGPSHDRGEHGARSIISCETGLAHT 123
L C C ++LSH + H L A +HG R +SCET L T
Sbjct: 22 LTCICCKIMEHIVLSHLNKH-LAANNILSIFQHGFRQALSCETQLVLT 68
>SB_5114| Best HMM Match : RVT_1 (HMM E-Value=1.10002e-42)
Length = 330
Score = 30.3 bits (65), Expect = 1.7
Identities = 18/48 (37%), Positives = 23/48 (47%)
Frame = -1
Query: 266 LFCSCLISYIRVLLSHTDHHALMAGPSHDRGEHGARSIISCETGLAHT 123
L C C ++LSH + H L A +HG R +SCET L T
Sbjct: 103 LTCICCKIMEHIVLSHLNKH-LAANNILSIFQHGFRQALSCETQLVLT 149
>SB_28979| Best HMM Match : RVT_1 (HMM E-Value=1.6e-40)
Length = 892
Score = 29.9 bits (64), Expect = 2.2
Identities = 24/73 (32%), Positives = 34/73 (46%), Gaps = 5/73 (6%)
Frame = -1
Query: 266 LFCSCLISYI--RVLLSHTDHHALMAGPSHDRGEHGARSIISCETGL---AHTGAIVYYQ 102
+F +CL + V+LSH + H L A +HG R+ SCET L H A + +
Sbjct: 461 IFATCLACKVMKHVVLSHLNKH-LAAHNIISNLQHGFRAGFSCETQLILAVHDWASILNK 519
Query: 101 RGNFFVAHLELVK 63
G V L+ K
Sbjct: 520 HGQVDVLLLDFQK 532
>SB_10917| Best HMM Match : SPRY (HMM E-Value=1.4e-17)
Length = 635
Score = 29.9 bits (64), Expect = 2.2
Identities = 19/64 (29%), Positives = 32/64 (50%), Gaps = 2/64 (3%)
Frame = +2
Query: 170 VPLDRGKAPPSGRDGRYGTEGLLCRR*GKSKRGILTLKYPIEHGIVTNW--DDMEKIWHH 343
V L + +GR+ G+ +CR+ K ++TL + I G+ + D EK+W+H
Sbjct: 441 VTLSQNVVSVTGREESGGSGTQVCRK----KAPLITLSHVIRMGLALSLVSDVKEKVWYH 496
Query: 344 TFYN 355
T N
Sbjct: 497 TCPN 500
>SB_19940| Best HMM Match : Drf_FH1 (HMM E-Value=0.97)
Length = 494
Score = 29.9 bits (64), Expect = 2.2
Identities = 18/57 (31%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Frame = +1
Query: 463 TRPPCTSPSKPCSRCRRPVVPTGIVLGLRRRVFSQPT-VAPSYGRVKHSAPPQIPCD 630
T+P T+P P + + VV T +V G ++ V + P V P G K + Q+P +
Sbjct: 435 TKPAATAPQLPSTALKTVVVTTAVVEGSKKVVLTVPAPVLPLQG--KPAGGAQLPSE 489
>SB_43973| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3142
Score = 29.5 bits (63), Expect = 3.0
Identities = 17/48 (35%), Positives = 23/48 (47%)
Frame = -1
Query: 266 LFCSCLISYIRVLLSHTDHHALMAGPSHDRGEHGARSIISCETGLAHT 123
L C C + ++LSH + H L +HG R +SCET L T
Sbjct: 854 LTCLCCKTMEHIVLSHLNKH-LSRFNILSNAQHGFRQGLSCETQLVLT 900
>SB_12978| Best HMM Match : Flavodoxin_1 (HMM E-Value=3.8e-24)
Length = 1592
Score = 29.1 bits (62), Expect = 3.9
Identities = 13/32 (40%), Positives = 21/32 (65%)
Frame = -2
Query: 412 VEGSLSEQDWVFLGGDTQVIVEGMMPNLLHVI 317
+ SL++Q+W + D Q+IVEG M N ++I
Sbjct: 1329 IRQSLTKQEWRWQMDDPQMIVEGAMQNHYNMI 1360
>SB_56940| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1981
Score = 29.1 bits (62), Expect = 3.9
Identities = 18/42 (42%), Positives = 22/42 (52%)
Frame = +2
Query: 599 STPPHRKSLAIWELKPVFANPPHEIPSLKGFLNGCRGLTSFN 724
STP KS A W+L NP EI ++ G + C TSFN
Sbjct: 1630 STPDASKSEASWKLS---RNPMAEIMTIPGKSSACFTNTSFN 1668
>SB_3433| Best HMM Match : Actin (HMM E-Value=0.00011)
Length = 580
Score = 29.1 bits (62), Expect = 3.9
Identities = 9/21 (42%), Positives = 14/21 (66%)
Frame = +2
Query: 287 PIEHGIVTNWDDMEKIWHHTF 349
P + G + NWD ++IW +TF
Sbjct: 292 PFQKGFLVNWDVEKQIWDYTF 312
Score = 27.9 bits (59), Expect = 9.0
Identities = 12/27 (44%), Positives = 19/27 (70%)
Frame = +3
Query: 90 EVAALVVDNGSGMCKAGFAGDDAPRAV 170
++A LV+D G+ K GFA + APR++
Sbjct: 232 KMATLVLDCGACSQKIGFASNQAPRSI 258
>SB_44703| Best HMM Match : Extensin_2 (HMM E-Value=0.077)
Length = 757
Score = 28.7 bits (61), Expect = 5.2
Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Frame = +1
Query: 469 PPCTSPSK-PCSRCRRPVVPTGIVLGLRRRVFSQPTVAPSYGRV 597
PP T+ P +R PV LG++R S P +AP Y R+
Sbjct: 318 PPVTATETLPPARLPPPVQQQASALGMKRTPTSPPGMAPKYQRM 361
>SB_20462| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 130
Score = 28.3 bits (60), Expect = 6.8
Identities = 13/24 (54%), Positives = 15/24 (62%)
Frame = -2
Query: 175 GNTARGASSPAKPALHIPEPLSTT 104
GNT R AKPAL++P P S T
Sbjct: 40 GNTNRRTRIQAKPALNLPSPPSKT 63
>SB_11603| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 635
Score = 28.3 bits (60), Expect = 6.8
Identities = 13/24 (54%), Positives = 14/24 (58%)
Frame = -2
Query: 175 GNTARGASSPAKPALHIPEPLSTT 104
GNT R PAKP L IP P + T
Sbjct: 68 GNTNRRTRIPAKPTLTIPSPPTKT 91
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,691,356
Number of Sequences: 59808
Number of extensions: 735482
Number of successful extensions: 2228
Number of sequences better than 10.0: 48
Number of HSP's better than 10.0 without gapping: 1939
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2217
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1974037988
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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