Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30588
(734 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g12110.1 68416.m01507 actin 11 (ACT11) identical to SP|P53496... 150 8e-37
At5g59370.1 68418.m07440 actin 4 (ACT4) identical to SP|P53494 A... 150 1e-36
At3g46520.1 68416.m05050 actin 12 (ACT12) identical to SP|P53497... 150 1e-36
At5g09810.1 68418.m01135 actin 7 (ACT7) / actin 2 identical to S... 148 3e-36
At3g53750.1 68416.m05938 actin 3 (ACT3) identical to SP|P53493 A... 148 4e-36
At2g37620.1 68415.m04615 actin 1 (ACT1) identical to SP|P10671 A... 148 4e-36
At3g18780.2 68416.m02386 actin 2 (ACT2) identical to SP|Q96292 A... 144 5e-35
At3g18780.1 68416.m02385 actin 2 (ACT2) identical to SP|Q96292 A... 144 5e-35
At1g49240.1 68414.m05520 actin 8 (ACT8) identical to SP|Q96293 A... 144 5e-35
At2g42100.1 68415.m05205 actin, putative very strong similarity ... 134 8e-32
At2g42170.1 68415.m05219 actin, putative similar to actin 2 [Ara... 113 1e-25
At2g42090.1 68415.m05204 actin, putative similar to SP|P53496 Ac... 112 2e-25
At3g27000.1 68416.m03378 actin-related protein 2 (ARP2) nearly i... 77 2e-14
At1g13180.1 68414.m01528 actin-related protein 3 (ARP3) identica... 64 1e-10
At1g73910.1 68414.m08559 actin-related protein 5 (ARP5) identica... 60 2e-09
At1g18450.1 68414.m02302 actin-related protein 4 (ARP4) neary id... 58 6e-09
At3g33520.1 68416.m04291 actin-related protein 6 (ARP6) nearly i... 46 2e-05
At3g12380.1 68416.m01543 actin/actin-like family protein similar... 44 8e-05
At3g60830.1 68416.m06805 actin-related protein 7 (ARP7) identica... 41 7e-04
At5g01040.1 68418.m00007 laccase family protein / diphenol oxida... 34 0.11
At2g35640.1 68415.m04371 hydroxyproline-rich glycoprotein family... 31 1.0
At3g12650.1 68416.m01575 expressed protein 30 1.8
At1g45180.1 68414.m05180 zinc finger (C3HC4-type RING finger) fa... 29 2.4
At1g16690.2 68414.m01999 transcription factor-related similar to... 29 3.2
At1g16690.1 68414.m01998 transcription factor-related similar to... 29 3.2
At5g59050.2 68418.m07399 expressed protein 28 5.6
At5g59050.1 68418.m07398 expressed protein 28 5.6
At5g06610.1 68418.m00747 expressed protein contains Pfam profile... 27 9.8
At2g06040.1 68415.m00661 expressed protein 27 9.8
>At3g12110.1 68416.m01507 actin 11 (ACT11) identical to SP|P53496
Actin 11 {Arabidopsis thaliana}
Length = 377
Score = 150 bits (364), Expect = 8e-37
Identities = 81/146 (55%), Positives = 89/146 (60%)
Frame = +3
Query: 87 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEARAKX 266
E++ LV DNG+GM KAGFAGDDAPRAVFPSIVGRPRH GVMVGMGQKD+YVGDEA++K
Sbjct: 5 EDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKR 64
Query: 267 XXXXXXXXXXXXXXLTGMTWRRFGIIPSTMTCVSPPRNTQSCSLRLPSTPRPTGEKMTQI 446
+ P P P+ EKMTQI
Sbjct: 65 GILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQI 124
Query: 447 MFETFNTPAMYVAIQAVLSL*TSGRT 524
MFETFNTPAMYVAIQAVLSL SGRT
Sbjct: 125 MFETFNTPAMYVAIQAVLSLYASGRT 150
Score = 128 bits (310), Expect = 3e-30
Identities = 55/60 (91%), Positives = 59/60 (98%)
Frame = +2
Query: 254 KSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNDLRVAPEEHPVLLTEAPLNPKANRRE 433
+SKRGILTLKYPIEHGIV+NWDDMEKIWHHTFYN+LRVAPEEHPVLLTEAPLNPKANR +
Sbjct: 61 QSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREK 120
>At5g59370.1 68418.m07440 actin 4 (ACT4) identical to SP|P53494
Actin 4 {Arabidopsis thaliana}
Length = 377
Score = 150 bits (363), Expect = 1e-36
Identities = 81/146 (55%), Positives = 89/146 (60%)
Frame = +3
Query: 87 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEARAKX 266
E++ LV DNG+GM KAGFAGDDAPRAVFPSIVGRPRH GVMVGMGQKD+YVGDEA++K
Sbjct: 5 EDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKR 64
Query: 267 XXXXXXXXXXXXXXLTGMTWRRFGIIPSTMTCVSPPRNTQSCSLRLPSTPRPTGEKMTQI 446
+ P P P+ EKMTQI
Sbjct: 65 GILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQI 124
Query: 447 MFETFNTPAMYVAIQAVLSL*TSGRT 524
MFETFNTPAMYVAIQAVLSL SGRT
Sbjct: 125 MFETFNTPAMYVAIQAVLSLYASGRT 150
Score = 128 bits (309), Expect = 4e-30
Identities = 55/60 (91%), Positives = 58/60 (96%)
Frame = +2
Query: 254 KSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNDLRVAPEEHPVLLTEAPLNPKANRRE 433
+SKRGILTLKYPIEHGIV NWDDMEKIWHHTFYN+LRVAPEEHPVLLTEAPLNPKANR +
Sbjct: 61 QSKRGILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREK 120
>At3g46520.1 68416.m05050 actin 12 (ACT12) identical to SP|P53497
Actin 12 {Arabidopsis thaliana}
Length = 377
Score = 150 bits (363), Expect = 1e-36
Identities = 81/146 (55%), Positives = 89/146 (60%)
Frame = +3
Query: 87 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEARAKX 266
E++ LV DNG+GM KAGFAGDDAPRAVFPSIVGRPRH GVMVGMGQKD+YVGDEA++K
Sbjct: 5 EDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKR 64
Query: 267 XXXXXXXXXXXXXXLTGMTWRRFGIIPSTMTCVSPPRNTQSCSLRLPSTPRPTGEKMTQI 446
+ P P P+ EKMTQI
Sbjct: 65 GILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQI 124
Query: 447 MFETFNTPAMYVAIQAVLSL*TSGRT 524
MFETFNTPAMYVAIQAVLSL SGRT
Sbjct: 125 MFETFNTPAMYVAIQAVLSLYASGRT 150
Score = 128 bits (309), Expect = 4e-30
Identities = 55/60 (91%), Positives = 58/60 (96%)
Frame = +2
Query: 254 KSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNDLRVAPEEHPVLLTEAPLNPKANRRE 433
+SKRGILTLKYPIEHGIV NWDDMEKIWHHTFYN+LRVAPEEHPVLLTEAPLNPKANR +
Sbjct: 61 QSKRGILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREK 120
>At5g09810.1 68418.m01135 actin 7 (ACT7) / actin 2 identical to
SP|P53492 Actin 7 (Actin-2) {Arabidopsis thaliana}
Length = 377
Score = 148 bits (359), Expect = 3e-36
Identities = 80/146 (54%), Positives = 88/146 (60%)
Frame = +3
Query: 87 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEARAKX 266
E++ LV DNG+GM KAGFAGDDAPRAVFPSIVGRPRH GVMVGMGQKD+YVGDEA++K
Sbjct: 5 EDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKR 64
Query: 267 XXXXXXXXXXXXXXLTGMTWRRFGIIPSTMTCVSPPRNTQSCSLRLPSTPRPTGEKMTQI 446
+ P P P+ EKMTQI
Sbjct: 65 GILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQI 124
Query: 447 MFETFNTPAMYVAIQAVLSL*TSGRT 524
MFETFN PAMYVAIQAVLSL SGRT
Sbjct: 125 MFETFNVPAMYVAIQAVLSLYASGRT 150
Score = 128 bits (310), Expect = 3e-30
Identities = 55/60 (91%), Positives = 59/60 (98%)
Frame = +2
Query: 254 KSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNDLRVAPEEHPVLLTEAPLNPKANRRE 433
+SKRGILTLKYPIEHGIV+NWDDMEKIWHHTFYN+LRVAPEEHPVLLTEAPLNPKANR +
Sbjct: 61 QSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREK 120
>At3g53750.1 68416.m05938 actin 3 (ACT3) identical to SP|P53493
Actin 3 {Arabidopsis thaliana}; supported by full-length
cDNA: Ceres: 19581.
Length = 377
Score = 148 bits (358), Expect = 4e-36
Identities = 80/146 (54%), Positives = 88/146 (60%)
Frame = +3
Query: 87 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEARAKX 266
E++ LV DNG+GM KAGFAGDDAPRAVFPSIVGRPRH GVMVGMGQKD+YVGDEA++K
Sbjct: 5 EDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKR 64
Query: 267 XXXXXXXXXXXXXXLTGMTWRRFGIIPSTMTCVSPPRNTQSCSLRLPSTPRPTGEKMTQI 446
+ P P P+ EKMTQI
Sbjct: 65 GILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHPILLTEAPLNPKANREKMTQI 124
Query: 447 MFETFNTPAMYVAIQAVLSL*TSGRT 524
MFETFN PAMYVAIQAVLSL SGRT
Sbjct: 125 MFETFNAPAMYVAIQAVLSLYASGRT 150
Score = 128 bits (308), Expect = 5e-30
Identities = 54/60 (90%), Positives = 58/60 (96%)
Frame = +2
Query: 254 KSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNDLRVAPEEHPVLLTEAPLNPKANRRE 433
+SKRGILTLKYPIEHGIV NWDDMEKIWHHTFYN+LRVAPEEHP+LLTEAPLNPKANR +
Sbjct: 61 QSKRGILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHPILLTEAPLNPKANREK 120
>At2g37620.1 68415.m04615 actin 1 (ACT1) identical to SP|P10671
Actin 1 (Actin 3) {Arabidopsis thaliana}
Length = 377
Score = 148 bits (358), Expect = 4e-36
Identities = 80/146 (54%), Positives = 88/146 (60%)
Frame = +3
Query: 87 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEARAKX 266
E++ LV DNG+GM KAGFAGDDAPRAVFPSIVGRPRH GVMVGMGQKD+YVGDEA++K
Sbjct: 5 EDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKR 64
Query: 267 XXXXXXXXXXXXXXLTGMTWRRFGIIPSTMTCVSPPRNTQSCSLRLPSTPRPTGEKMTQI 446
+ P P P+ EKMTQI
Sbjct: 65 GILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHPILLTEAPLNPKANREKMTQI 124
Query: 447 MFETFNTPAMYVAIQAVLSL*TSGRT 524
MFETFN PAMYVAIQAVLSL SGRT
Sbjct: 125 MFETFNAPAMYVAIQAVLSLYASGRT 150
Score = 128 bits (308), Expect = 5e-30
Identities = 54/60 (90%), Positives = 58/60 (96%)
Frame = +2
Query: 254 KSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNDLRVAPEEHPVLLTEAPLNPKANRRE 433
+SKRGILTLKYPIEHGIV NWDDMEKIWHHTFYN+LRVAPEEHP+LLTEAPLNPKANR +
Sbjct: 61 QSKRGILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHPILLTEAPLNPKANREK 120
>At3g18780.2 68416.m02386 actin 2 (ACT2) identical to SP|Q96292
Actin 2 {Arabidopsis thaliana}; nearly identical to
SP|Q96293 Actin 8 [Arabidopsis thaliana] GI:1669387 and
to At1g49240
Length = 377
Score = 144 bits (349), Expect = 5e-35
Identities = 76/146 (52%), Positives = 88/146 (60%)
Frame = +3
Query: 87 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEARAKX 266
+++ +V DNG+GM KAGFAGDDAPRAVFPS+VGRPRH GVMVGM QKD+YVGDEA++K
Sbjct: 5 DDIQPIVCDNGTGMVKAGFAGDDAPRAVFPSVVGRPRHHGVMVGMNQKDAYVGDEAQSKR 64
Query: 267 XXXXXXXXXXXXXXLTGMTWRRFGIIPSTMTCVSPPRNTQSCSLRLPSTPRPTGEKMTQI 446
+ P P P+ EKMTQI
Sbjct: 65 GILTLKYPIEHGVVSNWDDMEKIWHHTFYNELRIAPEEHPVLLTEAPLNPKANREKMTQI 124
Query: 447 MFETFNTPAMYVAIQAVLSL*TSGRT 524
MFETFN+PAMYVAIQAVLSL SGRT
Sbjct: 125 MFETFNSPAMYVAIQAVLSLYASGRT 150
Score = 128 bits (308), Expect = 5e-30
Identities = 53/60 (88%), Positives = 59/60 (98%)
Frame = +2
Query: 254 KSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNDLRVAPEEHPVLLTEAPLNPKANRRE 433
+SKRGILTLKYPIEHG+V+NWDDMEKIWHHTFYN+LR+APEEHPVLLTEAPLNPKANR +
Sbjct: 61 QSKRGILTLKYPIEHGVVSNWDDMEKIWHHTFYNELRIAPEEHPVLLTEAPLNPKANREK 120
>At3g18780.1 68416.m02385 actin 2 (ACT2) identical to SP|Q96292
Actin 2 {Arabidopsis thaliana}; nearly identical to
SP|Q96293 Actin 8 [Arabidopsis thaliana] GI:1669387 and
to At1g49240
Length = 371
Score = 144 bits (349), Expect = 5e-35
Identities = 76/146 (52%), Positives = 88/146 (60%)
Frame = +3
Query: 87 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEARAKX 266
+++ +V DNG+GM KAGFAGDDAPRAVFPS+VGRPRH GVMVGM QKD+YVGDEA++K
Sbjct: 5 DDIQPIVCDNGTGMVKAGFAGDDAPRAVFPSVVGRPRHHGVMVGMNQKDAYVGDEAQSKR 64
Query: 267 XXXXXXXXXXXXXXLTGMTWRRFGIIPSTMTCVSPPRNTQSCSLRLPSTPRPTGEKMTQI 446
+ P P P+ EKMTQI
Sbjct: 65 GILTLKYPIEHGVVSNWDDMEKIWHHTFYNELRIAPEEHPVLLTEAPLNPKANREKMTQI 124
Query: 447 MFETFNTPAMYVAIQAVLSL*TSGRT 524
MFETFN+PAMYVAIQAVLSL SGRT
Sbjct: 125 MFETFNSPAMYVAIQAVLSLYASGRT 150
Score = 128 bits (308), Expect = 5e-30
Identities = 53/60 (88%), Positives = 59/60 (98%)
Frame = +2
Query: 254 KSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNDLRVAPEEHPVLLTEAPLNPKANRRE 433
+SKRGILTLKYPIEHG+V+NWDDMEKIWHHTFYN+LR+APEEHPVLLTEAPLNPKANR +
Sbjct: 61 QSKRGILTLKYPIEHGVVSNWDDMEKIWHHTFYNELRIAPEEHPVLLTEAPLNPKANREK 120
>At1g49240.1 68414.m05520 actin 8 (ACT8) identical to SP|Q96293
Actin 8 {Arabidopsis thaliana}; nearly identical to
SP|Q96292 Actin 2 [Arabidopsis thaliana] GI:1669387, and
to At3g18780
Length = 377
Score = 144 bits (349), Expect = 5e-35
Identities = 76/146 (52%), Positives = 88/146 (60%)
Frame = +3
Query: 87 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEARAKX 266
+++ +V DNG+GM KAGFAGDDAPRAVFPS+VGRPRH GVMVGM QKD+YVGDEA++K
Sbjct: 5 DDIQPIVCDNGTGMVKAGFAGDDAPRAVFPSVVGRPRHHGVMVGMNQKDAYVGDEAQSKR 64
Query: 267 XXXXXXXXXXXXXXLTGMTWRRFGIIPSTMTCVSPPRNTQSCSLRLPSTPRPTGEKMTQI 446
+ P P P+ EKMTQI
Sbjct: 65 GILTLKYPIEHGVVSNWDDMEKIWHHTFYNELRIAPEEHPVLLTEAPLNPKANREKMTQI 124
Query: 447 MFETFNTPAMYVAIQAVLSL*TSGRT 524
MFETFN+PAMYVAIQAVLSL SGRT
Sbjct: 125 MFETFNSPAMYVAIQAVLSLYASGRT 150
Score = 128 bits (308), Expect = 5e-30
Identities = 53/60 (88%), Positives = 59/60 (98%)
Frame = +2
Query: 254 KSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNDLRVAPEEHPVLLTEAPLNPKANRRE 433
+SKRGILTLKYPIEHG+V+NWDDMEKIWHHTFYN+LR+APEEHPVLLTEAPLNPKANR +
Sbjct: 61 QSKRGILTLKYPIEHGVVSNWDDMEKIWHHTFYNELRIAPEEHPVLLTEAPLNPKANREK 120
>At2g42100.1 68415.m05205 actin, putative very strong similarity to
SP|P53496 Actin 11 {Arabidopsis thaliana}, SP|P53493
Actin 3 {Arabidopsis thaliana}; contains Pfam profile
PF00022: Actin
Length = 378
Score = 134 bits (323), Expect = 8e-32
Identities = 71/146 (48%), Positives = 87/146 (59%)
Frame = +3
Query: 87 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEARAKX 266
+E A+V DNG+GM KAGFAGDDAPRAVFPS+VGRPRH+GVMVGM +KD++VGDEA+A+
Sbjct: 6 DESVAIVCDNGTGMVKAGFAGDDAPRAVFPSVVGRPRHRGVMVGMDEKDTFVGDEAQARR 65
Query: 267 XXXXXXXXXXXXXXLTGMTWRRFGIIPSTMTCVSPPRNTQSCSLRLPSTPRPTGEKMTQI 446
+ P P P+ EKMTQI
Sbjct: 66 GILSLKYPIEHGVVSNWDDMEKIWHHTFYNELRLEPEEHPILLTEAPLNPKVNREKMTQI 125
Query: 447 MFETFNTPAMYVAIQAVLSL*TSGRT 524
MFE+F P+MY+ IQAVLSL +SGRT
Sbjct: 126 MFESFAFPSMYIGIQAVLSLYSSGRT 151
Score = 119 bits (286), Expect = 2e-27
Identities = 47/60 (78%), Positives = 57/60 (95%)
Frame = +2
Query: 254 KSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNDLRVAPEEHPVLLTEAPLNPKANRRE 433
+++RGIL+LKYPIEHG+V+NWDDMEKIWHHTFYN+LR+ PEEHP+LLTEAPLNPK NR +
Sbjct: 62 QARRGILSLKYPIEHGVVSNWDDMEKIWHHTFYNELRLEPEEHPILLTEAPLNPKVNREK 121
>At2g42170.1 68415.m05219 actin, putative similar to actin 2
[Arabidopsis thaliana] gi|9293903|dbj|BAB01806
Length = 329
Score = 113 bits (272), Expect = 1e-25
Identities = 46/60 (76%), Positives = 57/60 (95%)
Frame = +2
Query: 254 KSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNDLRVAPEEHPVLLTEAPLNPKANRRE 433
+++ GILTL YP+EHG+V+NWDDMEKIW+HTFY++LRVAPEEHPVLLTEAPLNPKA+R +
Sbjct: 16 EARSGILTLDYPMEHGVVSNWDDMEKIWYHTFYSELRVAPEEHPVLLTEAPLNPKADREK 75
Score = 59.3 bits (137), Expect = 3e-09
Identities = 36/105 (34%), Positives = 45/105 (42%)
Frame = +3
Query: 210 MVGMGQKDSYVGDEARAKXXXXXXXXXXXXXXXLTGMTWRRFGIIPSTMTCVSPPRNTQS 389
MVGM + D +VGD+A A+ + P
Sbjct: 1 MVGMNENDLFVGDDAEARSGILTLDYPMEHGVVSNWDDMEKIWYHTFYSELRVAPEEHPV 60
Query: 390 CSLRLPSTPRPTGEKMTQIMFETFNTPAMYVAIQAVLSL*TSGRT 524
P P+ EKMTQIMFETF P+MY+ +QA LSL SGRT
Sbjct: 61 LLTEAPLNPKADREKMTQIMFETFAVPSMYIGMQAALSLHASGRT 105
>At2g42090.1 68415.m05204 actin, putative similar to SP|P53496 Actin
11 {Arabidopsis thaliana}; contains Pfam profile
PF00022: Actin
Length = 366
Score = 112 bits (270), Expect = 2e-25
Identities = 52/76 (68%), Positives = 58/76 (76%)
Frame = +2
Query: 206 RDGRYGTEGLLCRR*GKSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNDLRVAPEEHP 385
RDG E + G + R ILTLK P+EHGIV NWDDMEKIWH+TFYN+LRV PEEHP
Sbjct: 35 RDGLNPNESYVGEE-GHANRDILTLKDPMEHGIVNNWDDMEKIWHYTFYNELRVDPEEHP 93
Query: 386 VLLTEAPLNPKANRRE 433
VLLTEAP NPKANR +
Sbjct: 94 VLLTEAPYNPKANREK 109
Score = 92.7 bits (220), Expect = 2e-19
Identities = 54/141 (38%), Positives = 70/141 (49%)
Frame = +3
Query: 102 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEARAKXXXXXX 281
+V D G GM +AGFAGD+AP+ VFP +VGRPR G+ +SYVG+E A
Sbjct: 4 IVCDKGHGMVQAGFAGDEAPKVVFPCVVGRPRD-----GLNPNESYVGEEGHANRDILTL 58
Query: 282 XXXXXXXXXLTGMTWRRFGIIPSTMTCVSPPRNTQSCSLRLPSTPRPTGEKMTQIMFETF 461
+ P P P+ EKMTQIMFE+F
Sbjct: 59 KDPMEHGIVNNWDDMEKIWHYTFYNELRVDPEEHPVLLTEAPYNPKANREKMTQIMFESF 118
Query: 462 NTPAMYVAIQAVLSL*TSGRT 524
+ PAMYV++Q+VL L +SGRT
Sbjct: 119 DVPAMYVSMQSVLYLYSSGRT 139
>At3g27000.1 68416.m03378 actin-related protein 2 (ARP2) nearly
identical to actin-related protein 2 (ARP2) [Arabidopsis
thaliana] GI:3818624; contains Pfam profile PF00022:
Actin
Length = 389
Score = 76.6 bits (180), Expect = 2e-14
Identities = 28/54 (51%), Positives = 39/54 (72%)
Frame = +2
Query: 272 LTLKYPIEHGIVTNWDDMEKIWHHTFYNDLRVAPEEHPVLLTEAPLNPKANRRE 433
L + YP+ +GIV NWDDME +W H FYN+L++ P + +LLT+ PLNP NR +
Sbjct: 66 LDINYPVHNGIVQNWDDMEHVWDHAFYNELKINPSDCKILLTDPPLNPSKNREK 119
Score = 61.3 bits (142), Expect = 6e-10
Identities = 43/144 (29%), Positives = 62/144 (43%), Gaps = 5/144 (3%)
Frame = +3
Query: 102 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRP--RHQGVMVGMGQKDSYVGDEARAKXXXX 275
+V DNG+G K GFAG++ P +VFP +VGRP R++ ++ KD VG+
Sbjct: 7 VVCDNGTGYVKCGFAGENFPTSVFPCVVGRPLLRYEESLMEQQVKDIVVGETCSELRHQL 66
Query: 276 XXXXXXXXXXXLTGMTWRRFGIIPSTMTCVSPPRNTQSCSLRL---PSTPRPTGEKMTQI 446
W + N C + L P P EKM +
Sbjct: 67 DINYPVHNGIV---QNWDDMEHVWDHAFYNELKINPSDCKILLTDPPLNPSKNREKMIET 123
Query: 447 MFETFNTPAMYVAIQAVLSL*TSG 518
MFE +N +++ IQAVL+L G
Sbjct: 124 MFEKYNFAGVFIQIQAVLTLYAQG 147
>At1g13180.1 68414.m01528 actin-related protein 3 (ARP3) identical
to actin-related protein 3 (ARP3) [Arabidopsis thaliana]
GI:21427461; contains Pfam profile PF00022: Actin
Length = 427
Score = 63.7 bits (148), Expect = 1e-10
Identities = 27/50 (54%), Positives = 33/50 (66%)
Frame = +2
Query: 278 LKYPIEHGIVTNWDDMEKIWHHTFYNDLRVAPEEHPVLLTEAPLNPKANR 427
L YPIEHG V +WD ME+ W +N LR PE+H LLTE+PL P +R
Sbjct: 86 LHYPIEHGQVEDWDAMERYWQQCIFNYLRCDPEDHYFLLTESPLTPPESR 135
Score = 50.4 bits (115), Expect = 1e-06
Identities = 53/193 (27%), Positives = 81/193 (41%), Gaps = 30/193 (15%)
Frame = +3
Query: 99 ALVVDNGSGMCKAGFAGDDAPRAVFPSIVG-----------------RPRHQ-GVMVGMG 224
A+V+DNG+G K GFAG+ P + P++V + +H GV +
Sbjct: 8 AIVIDNGTGYTKMGFAGNVEPCFILPTVVAVNESFLNQSKSSSKATWQTQHNAGVAADL- 66
Query: 225 QKDSYVGDEARAKXXXXXXXXXXXXXXXLTGMTW---RRFG--IIPSTMTCVSPPRNTQS 389
D Y+GDEA AK W R+ I + + C P +
Sbjct: 67 --DFYIGDEALAKSRSSSTHNLHYPIEHGQVEDWDAMERYWQQCIFNYLRC--DPEDHYF 122
Query: 390 CSLRLPSTPRPTGEKMTQIMFETFNTPAMYVAIQAVLSL*TSGRTNRYR-------AGTP 548
P TP + E +I+FETFN P +Y+A+ +VL+L T++ G
Sbjct: 123 LLTESPLTPPESREYTGEILFETFNVPGLYIAVNSVLALAAGYTTSKCEMTGVVVDVGDG 182
Query: 549 ATGVLPTNGGPIL 587
AT V+P G ++
Sbjct: 183 ATHVVPVAEGYVI 195
>At1g73910.1 68414.m08559 actin-related protein 5 (ARP5) identical
to actin-related protein 5 (ARP5) GI:21489922 from
[Arabidopsis thaliana]
Length = 145
Score = 59.7 bits (138), Expect = 2e-09
Identities = 24/58 (41%), Positives = 36/58 (62%)
Frame = +2
Query: 260 KRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNDLRVAPEEHPVLLTEAPLNPKANRRE 433
+R + + P + GIVT+WD ++ +W H F N L + P EHP+LL E PLN + R +
Sbjct: 79 RRDQMEILSPTKDGIVTDWDMVDNVWDHAFRNCLMIDPTEHPMLLAEPPLNSQQQREK 136
Score = 57.2 bits (132), Expect = 1e-08
Identities = 24/34 (70%), Positives = 31/34 (91%)
Frame = +3
Query: 87 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVG 188
+EV+A+VVD GS CKAG+AG+DAP+AVFPS+VG
Sbjct: 5 DEVSAIVVDLGSHTCKAGYAGEDAPKAVFPSVVG 38
>At1g18450.1 68414.m02302 actin-related protein 4 (ARP4) neary
identical to actin-related protein 4 (ARP4) [Arabidopsis
thaliana] GI:21427463; contains Pfam profile PF00022:
Actin; supporting cDNA gi|21427462|gb|AF507912.1|
Length = 441
Score = 58.0 bits (134), Expect = 6e-09
Identities = 24/58 (41%), Positives = 37/58 (63%)
Frame = +2
Query: 260 KRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNDLRVAPEEHPVLLTEAPLNPKANRRE 433
+R + + PI+ GIV++WD ++ IW H F + L + P EHP+LL E PLN + R +
Sbjct: 85 RRDHMEVLSPIKDGIVSDWDLVDNIWEHAFKSCLMIDPTEHPMLLAEPPLNTQQQREK 142
Score = 56.8 bits (131), Expect = 1e-08
Identities = 23/34 (67%), Positives = 31/34 (91%)
Frame = +3
Query: 87 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVG 188
+EV+A+VVD GS CKAG+AG+DAP+AVFPS++G
Sbjct: 5 DEVSAIVVDLGSHTCKAGYAGEDAPKAVFPSVIG 38
Score = 35.1 bits (77), Expect = 0.049
Identities = 19/65 (29%), Positives = 33/65 (50%), Gaps = 2/65 (3%)
Frame = +3
Query: 405 PSTPRPTGEKMTQIMFETFNTPAMYVAIQAVLSL*TSGRTNR--YRAGTPATGVLPTNGG 578
P + EK ++MFE + PA+++A VL+ +GR G +T + P + G
Sbjct: 133 PLNTQQQREKAAELMFEKYKVPALFMAKNPVLTSFATGRATSLVVDCGGGSTTISPVHDG 192
Query: 579 PILRK 593
+L+K
Sbjct: 193 YVLQK 197
>At3g33520.1 68416.m04291 actin-related protein 6 (ARP6) nearly
identical to actin-related protein 6 (ARP6) [Arabidopsis
thaliana] GI:21427467; contains Pfam profile PF00022:
Actin
Length = 421
Score = 46.4 bits (105), Expect = 2e-05
Identities = 22/55 (40%), Positives = 32/55 (58%), Gaps = 1/55 (1%)
Frame = +2
Query: 278 LKYPIEHGIVTNWDDMEKIWHHTFYNDLRVAPEEHPVLLTEAPLN-PKANRREDD 439
++ PI+ G + N D +IW H F + L +AP +LLTEAPL+ P R D+
Sbjct: 61 VRRPIDRGYLINSDLQREIWSHLFTSLLHIAPSSSSLLLTEAPLSIPSVQRTTDE 115
Score = 32.7 bits (71), Expect = 0.26
Identities = 13/31 (41%), Positives = 20/31 (64%)
Frame = +3
Query: 102 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRP 194
+V+DNG G+ KAG G+ P V P+ + +P
Sbjct: 5 VVLDNGGGLIKAGQGGERDPTTVIPNCLYKP 35
>At3g12380.1 68416.m01543 actin/actin-like family protein similar to
SP|P53946 Actin-like protein ARP5 {Saccharomyces
cerevisiae}; contains Pfam profile PF00022: Actin
Length = 724
Score = 44.4 bits (100), Expect = 8e-05
Identities = 34/141 (24%), Positives = 59/141 (41%), Gaps = 7/141 (4%)
Frame = +3
Query: 102 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEARAKXXXXXX 281
+V+DNG+ + G+AG+ PR VF +IV RPRH+ G+ + VGD +
Sbjct: 22 IVIDNGASYFRIGWAGETEPRVVFRNIVQRPRHKAT----GETVTIVGDLDPSMMKYFDC 77
Query: 282 XXXXXXXXXLTGMTWRRFGIIPSTMTCVSPPRNTQSCSLRLP-------STPRPTGEKMT 440
+ + + +F I+ + + P P + KM
Sbjct: 78 TRSGPRSPFDSNVVY-QFEIMEYILDYAFDRLGANGSGIDHPILITECACNPVQSRSKMA 136
Query: 441 QIMFETFNTPAMYVAIQAVLS 503
+++FET+ PA+ + A S
Sbjct: 137 ELLFETYGVPAVAFGVDAAFS 157
>At3g60830.1 68416.m06805 actin-related protein 7 (ARP7) identical
to actin-related protein 7 (ARP7) [Arabidopsis thaliana]
GI:21427469; contains Pfam profile PF00022: Actin
Length = 363
Score = 41.1 bits (92), Expect = 7e-04
Identities = 19/37 (51%), Positives = 24/37 (64%)
Frame = +3
Query: 411 TPRPTGEKMTQIMFETFNTPAMYVAIQAVLSL*TSGR 521
TP+ E++ Q+MFETFN Y + QAVLSL GR
Sbjct: 99 TPKAIREQLVQLMFETFNVSGFYASEQAVLSLYAVGR 135
Score = 33.9 bits (74), Expect = 0.11
Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Frame = +2
Query: 287 PIEHGIVTNWDDMEKIWHHTFYNDLR-VAPEEHPVLLTEAPLNPKANRRE 433
PIE G++ +WD ME + + Y L E +L T+ PKA R +
Sbjct: 57 PIERGLIRDWDAMEDLLRYVVYTGLGWEEGNEGNILFTDPLCTPKAIREQ 106
>At5g01040.1 68418.m00007 laccase family protein / diphenol oxidase
family protein similar to laccase [Pinus
taeda][GI:13661201], lac110 laccase, Populus
trichocarpa, EMBL:PTY13773
Length = 584
Score = 33.9 bits (74), Expect = 0.11
Identities = 19/46 (41%), Positives = 28/46 (60%)
Frame = -2
Query: 223 PIPTITP*WRGLPTIEGNTARGASSPAKPALHIPEPLSTTNAATSS 86
P P I P RGL +G T+ +SSPA+P + +P +ST + TS+
Sbjct: 290 PTPDIKP-TRGLIVYQGATS--SSSPAEPLMPVPNDMSTAHRFTSN 332
>At2g35640.1 68415.m04371 hydroxyproline-rich glycoprotein family
protein contains proline-rich extensin domains,
INTERPRO:IPR002965
Length = 340
Score = 30.7 bits (66), Expect = 1.0
Identities = 14/27 (51%), Positives = 17/27 (62%)
Frame = +3
Query: 342 IPSTMTCVSPPRNTQSCSLRLPSTPRP 422
IP+T+ PP QS SL LPS P+P
Sbjct: 187 IPTTIVLSLPPPPPQSLSLSLPSPPQP 213
>At3g12650.1 68416.m01575 expressed protein
Length = 238
Score = 29.9 bits (64), Expect = 1.8
Identities = 12/28 (42%), Positives = 19/28 (67%)
Frame = -2
Query: 412 VEGSLSEQDWVFLGGDTQVIVEGMMPNL 329
+EG E+D LG +T+ ++EGMM N+
Sbjct: 99 IEGPTVERDLSALGNETRQVLEGMMKNM 126
>At1g45180.1 68414.m05180 zinc finger (C3HC4-type RING finger)
family protein similar to Pfam domain, PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 645
Score = 29.5 bits (63), Expect = 2.4
Identities = 18/60 (30%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
Frame = +3
Query: 330 RFGIIPSTMTCVSPPRNTQSCSLRLPSTPRPTGEKMTQIMF-ETFNTPAMYVAIQAVLSL 506
R G++ S + +SPP T+S S P PT ++ T F + N+P + A +S+
Sbjct: 231 RRGLVSSAVPNLSPPTITESSSRNYPVWVNPTYQQETVSNFAPSLNSPGLIPADHQQISM 290
>At1g16690.2 68414.m01999 transcription factor-related similar to
enhancer of polycomb (GI:11907923)[Homo sapiens]
Length = 439
Score = 29.1 bits (62), Expect = 3.2
Identities = 19/85 (22%), Positives = 38/85 (44%), Gaps = 6/85 (7%)
Frame = +2
Query: 272 LTLKYPIEHGIVTNWDDMEKIWHHTFYNDLRVAP---EEHPVLL---TEAPLNPKANRRE 433
L++KY + H I + W + +IW L+ P + +P + E A R +
Sbjct: 178 LSIKYGVFHAIYSYWKNKREIWQKPILRRLQPPPPVNDTNPYNVFRPREKAHRLHARRMQ 237
Query: 434 DDPDHVRNIQHARHVRRHPSRALAV 508
++ ++ + R VRR+ +A +
Sbjct: 238 QRENNAQSFEKLRQVRRNLDQAKTI 262
>At1g16690.1 68414.m01998 transcription factor-related similar to
enhancer of polycomb (GI:11907923)[Homo sapiens]
Length = 439
Score = 29.1 bits (62), Expect = 3.2
Identities = 19/85 (22%), Positives = 38/85 (44%), Gaps = 6/85 (7%)
Frame = +2
Query: 272 LTLKYPIEHGIVTNWDDMEKIWHHTFYNDLRVAP---EEHPVLL---TEAPLNPKANRRE 433
L++KY + H I + W + +IW L+ P + +P + E A R +
Sbjct: 178 LSIKYGVFHAIYSYWKNKREIWQKPILRRLQPPPPVNDTNPYNVFRPREKAHRLHARRMQ 237
Query: 434 DDPDHVRNIQHARHVRRHPSRALAV 508
++ ++ + R VRR+ +A +
Sbjct: 238 QRENNAQSFEKLRQVRRNLDQAKTI 262
>At5g59050.2 68418.m07399 expressed protein
Length = 193
Score = 28.3 bits (60), Expect = 5.6
Identities = 21/75 (28%), Positives = 35/75 (46%)
Frame = +2
Query: 383 PVLLTEAPLNPKANRREDDPDHVRNIQHARHVRRHPSRALAVDVRSYQPVSCWDSGDGCS 562
P +++ P +PKA + ED+ D ++ + R + + D +Q SC SG G
Sbjct: 34 PDFVSDEPDSPKA-KNEDEED-----EYITELTRQMTNYMLQDDEKHQK-SC-GSGSGSP 85
Query: 563 PNQRWPHLTEGLSTP 607
+ W GLS+P
Sbjct: 86 QSTLWSPFASGLSSP 100
>At5g59050.1 68418.m07398 expressed protein
Length = 312
Score = 28.3 bits (60), Expect = 5.6
Identities = 21/75 (28%), Positives = 35/75 (46%)
Frame = +2
Query: 383 PVLLTEAPLNPKANRREDDPDHVRNIQHARHVRRHPSRALAVDVRSYQPVSCWDSGDGCS 562
P +++ P +PKA + ED+ D ++ + R + + D +Q SC SG G
Sbjct: 34 PDFVSDEPDSPKA-KNEDEED-----EYITELTRQMTNYMLQDDEKHQK-SC-GSGSGSP 85
Query: 563 PNQRWPHLTEGLSTP 607
+ W GLS+P
Sbjct: 86 QSTLWSPFASGLSSP 100
>At5g06610.1 68418.m00747 expressed protein contains Pfam profile
PF04788: Protein of unknown function (DUF620)
Length = 368
Score = 27.5 bits (58), Expect = 9.8
Identities = 12/41 (29%), Positives = 23/41 (56%)
Frame = -2
Query: 199 WRGLPTIEGNTARGASSPAKPALHIPEPLSTTNAATSSSHI 77
WR P + + A+GA P + AL +PL+ ++ +S+ +
Sbjct: 167 WRYTPWLGDHAAKGAIRPLRRALQGLDPLTISSVFSSAQFV 207
>At2g06040.1 68415.m00661 expressed protein
Length = 461
Score = 27.5 bits (58), Expect = 9.8
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = +2
Query: 578 PHLTEGLSTPPHRKSLAIWELKPVFANPPHEIPSLK 685
PH+ G+S R S IW + F+ PP + PSL+
Sbjct: 341 PHVGIGVSNK-ERSSPTIWVPRSNFSFPPRKAPSLQ 375
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,886,682
Number of Sequences: 28952
Number of extensions: 483721
Number of successful extensions: 1514
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 1404
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1512
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1614253080
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -