Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30587
         (827 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC16.04 |dus3||tRNA dihydrouridine synthase Dus3 |Schizosaccha...    28   1.9  
SPCC550.09 |||peroxin Pex32 |Schizosaccharomyces pombe|chr 3|||M...    27   4.3  
SPAC328.01c ||SPAC3A11.01|karyopherin|Schizosaccharomyces pombe|...    26   7.5  
SPBPB8B6.04c |grt1|SPAPB8B6.04c, SPAPB8B6.04c|transcription fact...    25   9.9  

>SPAC16.04 |dus3||tRNA dihydrouridine synthase Dus3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 617

 Score = 27.9 bits (59), Expect = 1.9
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = -3

Query: 453 SECSMCSPLDSGKMPPWILLHSL 385
           SE +MC PL  G  P W L+  L
Sbjct: 268 SEMAMCYPLMQGHQPEWALVRGL 290


>SPCC550.09 |||peroxin Pex32 |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 535

 Score = 26.6 bits (56), Expect = 4.3
 Identities = 14/31 (45%), Positives = 17/31 (54%)
 Frame = -2

Query: 736 AQITSQPKPPKGKNLIRRKWSLPS*TFQITF 644
           A+ T+Q  PP G   I  KWS+   TF  TF
Sbjct: 429 AEPTAQLLPPDGLAWIDDKWSISPWTFTDTF 459


>SPAC328.01c ||SPAC3A11.01|karyopherin|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1234

 Score = 25.8 bits (54), Expect = 7.5
 Identities = 19/76 (25%), Positives = 32/76 (42%)
 Frame = +3

Query: 288 FTKPVPSLGDLTFDIQAGYPVEFFVGFINKGSVDYVVESMEASFRYPMDYTYYIQNFTAL 467
           F K V  +     D+Q   PV   + F+N      + E + A + Y  DYT +  +  A 
Sbjct: 688 FEKLVGPVVKTWLDVQP--PVNSPMEFLNHIGFPQMAEYLSAKYPYNADYTQFELDADAA 745

Query: 468 PYNREVKPKQEATLPI 515
            Y   ++  ++   PI
Sbjct: 746 SYQSNLETGRKWLWPI 761


>SPBPB8B6.04c |grt1|SPAPB8B6.04c, SPAPB8B6.04c|transcription factor
           Grt1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 648

 Score = 25.4 bits (53), Expect = 9.9
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = +3

Query: 507 LPIPFIPNEAFAGRPFG 557
           +PIP +PNEAF+   +G
Sbjct: 333 IPIPAVPNEAFSFSGYG 349


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,535,206
Number of Sequences: 5004
Number of extensions: 75075
Number of successful extensions: 175
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 168
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 175
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 406444570
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)