Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30587
         (827 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_1396 + 29855256-29855328,29856019-29856180,29856466-298565...    35   0.069
02_02_0461 + 10534733-10536302,10536347-10536396,10536845-10538227     30   2.6  
01_06_1740 - 39575614-39576981                                         28   7.9  

>06_03_1396 +
           29855256-29855328,29856019-29856180,29856466-29856516,
           29857189-29857277,29857632-29857709,29857811-29858014,
           29858101-29858172,29858262-29858306
          Length = 257

 Score = 35.1 bits (77), Expect = 0.069
 Identities = 20/65 (30%), Positives = 29/65 (44%), Gaps = 1/65 (1%)
 Frame = +3

Query: 330 IQAGYPVEFFVGFINKGSVDYVVESMEASFRYPMDYTYYIQNFTALP-YNREVKPKQEAT 506
           + AG   E  VG  N+G     V ++ ++   P D+  Y QN T    +N  V    +AT
Sbjct: 80  VLAGEETELLVGLQNEGESTLNVVAIHSTLHLPFDHKMYGQNLTVQNFFNASVPVSVQAT 139

Query: 507 LPIPF 521
            P  F
Sbjct: 140 FPYTF 144


>02_02_0461 + 10534733-10536302,10536347-10536396,10536845-10538227
          Length = 1000

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 14/43 (32%), Positives = 21/43 (48%)
 Frame = +2

Query: 539 CWKTFRIKCTALITETPAEMLTRKPSTTRHLETLWESYLEGLR 667
           CWK F    T  +  +   + TR P   R ++T+    LEGL+
Sbjct: 330 CWKRFCAPLTNALQGSMMLVTTRSPDVAREVQTMEPIRLEGLQ 372


>01_06_1740 - 39575614-39576981
          Length = 455

 Score = 28.3 bits (60), Expect = 7.9
 Identities = 13/37 (35%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
 Frame = -1

Query: 770 GRSLPGPWRT-KSPNYFPTQATQGEEPYKKEMVSPIL 663
           GRS P PWR    P  + + +   E P +    SP+L
Sbjct: 218 GRSSPSPWRPHNEPGSYASPSPSSEAPARTPAKSPML 254


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,317,743
Number of Sequences: 37544
Number of extensions: 510203
Number of successful extensions: 1107
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1080
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1107
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2279943096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)