Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30587
         (827 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_3675| Best HMM Match : TRAP_alpha (HMM E-Value=0)                  101   7e-22
SB_45246| Best HMM Match : zf-MYND (HMM E-Value=0.19)                  29   3.5  
SB_53086| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.5  

>SB_3675| Best HMM Match : TRAP_alpha (HMM E-Value=0)
          Length = 667

 Score =  101 bits (242), Expect = 7e-22
 Identities = 51/107 (47%), Positives = 63/107 (58%)
 Frame = +3

Query: 246 ECCKSSQDIDTTILFTKPVPSLGDLTFDIQAGYPVEFFVGFINKGSVDYVVESMEASFRY 425
           +  K S D DT ILFTK             AG   +  V F N G  D++V+ MEAS RY
Sbjct: 138 DALKPSPDADTVILFTKNTEQ------QFSAGLVSKCLVSFSNNGRNDFMVDMMEASLRY 191

Query: 426 PMDYTYYIQNFTALPYNREVKPKQEATLPIPFIPNEAFAGRPFGLNV 566
           P DY+YYIQNFTA  YN  VKP  +A+    F P+E+F GRPFGL++
Sbjct: 192 PQDYSYYIQNFTAFQYNTVVKPGHQASFEYAFRPHESFGGRPFGLSI 238


>SB_45246| Best HMM Match : zf-MYND (HMM E-Value=0.19)
          Length = 1828

 Score = 29.5 bits (63), Expect = 3.5
 Identities = 20/67 (29%), Positives = 27/67 (40%), Gaps = 1/67 (1%)
 Frame = +3

Query: 276 TTILFTKPVPSLGDLTFDIQ-AGYPVEFFVGFINKGSVDYVVESMEASFRYPMDYTYYIQ 452
           TT+ FTK V    DL+ D    GY V   V            ++ E +   P+ YT  I+
Sbjct: 744 TTVRFTKGVARFTDLSIDTPGTGYVVNMTVSTTPSSMYHGTAQTEEITIEEPLLYTSRIE 803

Query: 453 NFTALPY 473
               L Y
Sbjct: 804 AILNLQY 810


>SB_53086| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 667

 Score = 29.5 bits (63), Expect = 3.5
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = -1

Query: 461 GEVLNVVCVVHWIAERCLH 405
           G  L V+C   W+ ERCLH
Sbjct: 142 GFTLQVICSQEWVRERCLH 160


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,498,493
Number of Sequences: 59808
Number of extensions: 567901
Number of successful extensions: 1406
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1296
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1404
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2323539746
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)