Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30587
(827 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AK222809-1|BAD96529.1| 286|Homo sapiens signal sequence recepto... 113 7e-25
CR456961-1|CAG33242.1| 286|Homo sapiens SSR1 protein. 112 1e-24
BT007387-1|AAP36051.1| 286|Homo sapiens signal sequence recepto... 112 1e-24
BC007710-1|AAH07710.1| 286|Homo sapiens signal sequence recepto... 112 1e-24
AL139095-1|CAI16444.1| 286|Homo sapiens signal sequence recepto... 112 1e-24
AK222762-1|BAD96482.1| 286|Homo sapiens signal sequence recepto... 112 1e-24
AF156965-1|AAD48778.1| 286|Homo sapiens translocon-associated p... 112 1e-24
Z12830-1|CAA78290.1| 286|Homo sapiens SSR alpha subunit protein. 110 5e-24
AK075562-1|BAC11701.1| 259|Homo sapiens protein ( Homo sapiens ... 110 7e-24
AK095502-1|BAC04560.1| 197|Homo sapiens protein ( Homo sapiens ... 33 1.3
>AK222809-1|BAD96529.1| 286|Homo sapiens signal sequence receptor,
alpha variant protein.
Length = 286
Score = 113 bits (272), Expect = 7e-25
Identities = 71/162 (43%), Positives = 90/162 (55%)
Frame = +3
Query: 255 KSSQDIDTTILFTKPVPSLGDLTFDIQAGYPVEFFVGFINKGSVDYVVESMEASFRYPMD 434
++S DTTILF K G+ D A V+F VGF NKG+ D++VES++ASFRYP D
Sbjct: 78 EASPSADTTILFVK-----GE---DFPANNIVKFLVGFTNKGTEDFIVESLDASFRYPQD 129
Query: 435 YTYYIQNFTALPYNREVKPKQEATLPIPFIPNEAFAGRPFGLNVXXXXXXXXXKCLPGSR 614
Y +YIQNFTALP N V P+++AT FIP E GRPFGL + K L G+
Sbjct: 130 YQFYIQNFTALPLNTVVPPQRQATFEYSFIPAEPMGGRPFGLVI-----NLNYKDLNGNV 184
Query: 615 LQPDTWKHCGKVIWKV*DGRDHFLLIRFFPLGGLGWEVIWAL 740
Q + VI + DG D + + L GLG VI L
Sbjct: 185 FQDAVFNQTVTVIERE-DGLDGETIFMYMFLAGLGLPVIVGL 225
>CR456961-1|CAG33242.1| 286|Homo sapiens SSR1 protein.
Length = 286
Score = 112 bits (270), Expect = 1e-24
Identities = 71/162 (43%), Positives = 90/162 (55%)
Frame = +3
Query: 255 KSSQDIDTTILFTKPVPSLGDLTFDIQAGYPVEFFVGFINKGSVDYVVESMEASFRYPMD 434
++S DTTILF K G+ D A V+F VGF NKG+ D++VES++ASFRYP D
Sbjct: 78 EASPSADTTILFVK-----GE---DFPANNIVKFLVGFTNKGTEDFIVESLDASFRYPQD 129
Query: 435 YTYYIQNFTALPYNREVKPKQEATLPIPFIPNEAFAGRPFGLNVXXXXXXXXXKCLPGSR 614
Y +YIQNFTALP N V P+++AT FIP E GRPFGL + K L G+
Sbjct: 130 YQFYIQNFTALPLNTVVPPQRQATFEYSFIPAEPMGGRPFGLVI-----NLNYKDLNGNV 184
Query: 615 LQPDTWKHCGKVIWKV*DGRDHFLLIRFFPLGGLGWEVIWAL 740
Q + VI + DG D + + L GLG VI L
Sbjct: 185 FQDAVFNQTVTVIERE-DGLDGETIFMYMFLAGLGLLVIVGL 225
>BT007387-1|AAP36051.1| 286|Homo sapiens signal sequence receptor,
alpha (translocon-associated protein alpha) protein.
Length = 286
Score = 112 bits (270), Expect = 1e-24
Identities = 71/162 (43%), Positives = 90/162 (55%)
Frame = +3
Query: 255 KSSQDIDTTILFTKPVPSLGDLTFDIQAGYPVEFFVGFINKGSVDYVVESMEASFRYPMD 434
++S DTTILF K G+ D A V+F VGF NKG+ D++VES++ASFRYP D
Sbjct: 78 EASPSADTTILFVK-----GE---DFPANNIVKFLVGFTNKGTEDFIVESLDASFRYPQD 129
Query: 435 YTYYIQNFTALPYNREVKPKQEATLPIPFIPNEAFAGRPFGLNVXXXXXXXXXKCLPGSR 614
Y +YIQNFTALP N V P+++AT FIP E GRPFGL + K L G+
Sbjct: 130 YQFYIQNFTALPLNTVVPPQRQATFEYSFIPAEPMGGRPFGLVI-----NLNYKDLNGNV 184
Query: 615 LQPDTWKHCGKVIWKV*DGRDHFLLIRFFPLGGLGWEVIWAL 740
Q + VI + DG D + + L GLG VI L
Sbjct: 185 FQDAVFNQTVTVIERE-DGLDGETIFMYMFLAGLGLLVIVGL 225
>BC007710-1|AAH07710.1| 286|Homo sapiens signal sequence receptor,
alpha (translocon-associated protein alpha) protein.
Length = 286
Score = 112 bits (270), Expect = 1e-24
Identities = 71/162 (43%), Positives = 90/162 (55%)
Frame = +3
Query: 255 KSSQDIDTTILFTKPVPSLGDLTFDIQAGYPVEFFVGFINKGSVDYVVESMEASFRYPMD 434
++S DTTILF K G+ D A V+F VGF NKG+ D++VES++ASFRYP D
Sbjct: 78 EASPSADTTILFVK-----GE---DFPANNIVKFLVGFTNKGTEDFIVESLDASFRYPQD 129
Query: 435 YTYYIQNFTALPYNREVKPKQEATLPIPFIPNEAFAGRPFGLNVXXXXXXXXXKCLPGSR 614
Y +YIQNFTALP N V P+++AT FIP E GRPFGL + K L G+
Sbjct: 130 YQFYIQNFTALPLNTVVPPQRQATFEYSFIPAEPMGGRPFGLVI-----NLNYKDLNGNV 184
Query: 615 LQPDTWKHCGKVIWKV*DGRDHFLLIRFFPLGGLGWEVIWAL 740
Q + VI + DG D + + L GLG VI L
Sbjct: 185 FQDAVFNQTVTVIERE-DGLDGETIFMYMFLAGLGLLVIVGL 225
>AL139095-1|CAI16444.1| 286|Homo sapiens signal sequence receptor,
alpha (translocon-associated protein alpha) protein.
Length = 286
Score = 112 bits (270), Expect = 1e-24
Identities = 71/162 (43%), Positives = 90/162 (55%)
Frame = +3
Query: 255 KSSQDIDTTILFTKPVPSLGDLTFDIQAGYPVEFFVGFINKGSVDYVVESMEASFRYPMD 434
++S DTTILF K G+ D A V+F VGF NKG+ D++VES++ASFRYP D
Sbjct: 78 EASPSADTTILFVK-----GE---DFPANNIVKFLVGFTNKGTEDFIVESLDASFRYPQD 129
Query: 435 YTYYIQNFTALPYNREVKPKQEATLPIPFIPNEAFAGRPFGLNVXXXXXXXXXKCLPGSR 614
Y +YIQNFTALP N V P+++AT FIP E GRPFGL + K L G+
Sbjct: 130 YQFYIQNFTALPLNTVVPPQRQATFEYSFIPAEPMGGRPFGLVI-----NLNYKDLNGNV 184
Query: 615 LQPDTWKHCGKVIWKV*DGRDHFLLIRFFPLGGLGWEVIWAL 740
Q + VI + DG D + + L GLG VI L
Sbjct: 185 FQDAVFNQTVTVIERE-DGLDGETIFMYMFLAGLGLLVIVGL 225
>AK222762-1|BAD96482.1| 286|Homo sapiens signal sequence receptor,
alpha variant protein.
Length = 286
Score = 112 bits (270), Expect = 1e-24
Identities = 71/162 (43%), Positives = 90/162 (55%)
Frame = +3
Query: 255 KSSQDIDTTILFTKPVPSLGDLTFDIQAGYPVEFFVGFINKGSVDYVVESMEASFRYPMD 434
++S DTTILF K G+ D A V+F VGF NKG+ D++VES++ASFRYP D
Sbjct: 78 EASPSADTTILFVK-----GE---DFPANNIVKFLVGFTNKGTEDFIVESLDASFRYPQD 129
Query: 435 YTYYIQNFTALPYNREVKPKQEATLPIPFIPNEAFAGRPFGLNVXXXXXXXXXKCLPGSR 614
Y +YIQNFTALP N V P+++AT FIP E GRPFGL + K L G+
Sbjct: 130 YQFYIQNFTALPLNTVVPPQRQATFEYSFIPAEPMGGRPFGLVI-----NLNYKDLNGNV 184
Query: 615 LQPDTWKHCGKVIWKV*DGRDHFLLIRFFPLGGLGWEVIWAL 740
Q + VI + DG D + + L GLG VI L
Sbjct: 185 FQDAVFNQTVTVIERE-DGLDGETIFMYMFLAGLGLLVIVGL 225
>AF156965-1|AAD48778.1| 286|Homo sapiens translocon-associated
protein alpha subunit protein.
Length = 286
Score = 112 bits (270), Expect = 1e-24
Identities = 71/162 (43%), Positives = 90/162 (55%)
Frame = +3
Query: 255 KSSQDIDTTILFTKPVPSLGDLTFDIQAGYPVEFFVGFINKGSVDYVVESMEASFRYPMD 434
++S DTTILF K G+ D A V+F VGF NKG+ D++VES++ASFRYP D
Sbjct: 78 EASPSADTTILFVK-----GE---DFPANNIVKFLVGFTNKGTEDFIVESLDASFRYPQD 129
Query: 435 YTYYIQNFTALPYNREVKPKQEATLPIPFIPNEAFAGRPFGLNVXXXXXXXXXKCLPGSR 614
Y +YIQNFTALP N V P+++AT FIP E GRPFGL + K L G+
Sbjct: 130 YQFYIQNFTALPLNTVVPPQRQATFEYSFIPAEPMGGRPFGLVI-----NLNYKDLNGNV 184
Query: 615 LQPDTWKHCGKVIWKV*DGRDHFLLIRFFPLGGLGWEVIWAL 740
Q + VI + DG D + + L GLG VI L
Sbjct: 185 FQDAVFNQTVTVIERE-DGLDGETIFMYMFLAGLGLLVIVGL 225
>Z12830-1|CAA78290.1| 286|Homo sapiens SSR alpha subunit protein.
Length = 286
Score = 110 bits (265), Expect = 5e-24
Identities = 70/162 (43%), Positives = 90/162 (55%)
Frame = +3
Query: 255 KSSQDIDTTILFTKPVPSLGDLTFDIQAGYPVEFFVGFINKGSVDYVVESMEASFRYPMD 434
++S DTTILF K G+ D A V+F VGF NKG+ D++VES++ASFRYP D
Sbjct: 78 EASPSADTTILFVK-----GE---DFPANNIVKFLVGFTNKGTEDFIVESLDASFRYPQD 129
Query: 435 YTYYIQNFTALPYNREVKPKQEATLPIPFIPNEAFAGRPFGLNVXXXXXXXXXKCLPGSR 614
+ +YIQNFTALP N V P+++AT FIP E GRPFGL + K L G+
Sbjct: 130 HQFYIQNFTALPLNTVVPPQRQATFEYSFIPAEPMGGRPFGLVI-----NLNYKDLNGNV 184
Query: 615 LQPDTWKHCGKVIWKV*DGRDHFLLIRFFPLGGLGWEVIWAL 740
Q + VI + DG D + + L GLG VI L
Sbjct: 185 FQDAVFNQTVTVIERE-DGLDGETIFMYMFLAGLGLLVIVGL 225
>AK075562-1|BAC11701.1| 259|Homo sapiens protein ( Homo sapiens
cDNA PSEC0262 fis, clone NT2RP3004505, highly similar to
TRANSLOCON-ASSOCIATED PROTEIN, ALPHA SUBUNIT PRECURSOR.
).
Length = 259
Score = 110 bits (264), Expect = 7e-24
Identities = 64/142 (45%), Positives = 80/142 (56%)
Frame = +3
Query: 315 DLTFDIQAGYPVEFFVGFINKGSVDYVVESMEASFRYPMDYTYYIQNFTALPYNREVKPK 494
DL D A V+F VGF NKG+ D++VES++ASFRYP DY +YIQNFTALP N V P+
Sbjct: 63 DLVEDFPANNIVKFLVGFTNKGTEDFIVESLDASFRYPQDYQFYIQNFTALPLNTVVPPQ 122
Query: 495 QEATLPIPFIPNEAFAGRPFGLNVXXXXXXXXXKCLPGSRLQPDTWKHCGKVIWKV*DGR 674
++AT FIP E GRPFGL + K L G+ Q + VI + DG
Sbjct: 123 RQATFEYSFIPAEPMGGRPFGLVI-----NLNYKDLNGNVFQDAVFNQTVTVIERE-DGL 176
Query: 675 DHFLLIRFFPLGGLGWEVIWAL 740
D + + L GLG VI L
Sbjct: 177 DGETIFMYMFLAGLGLLVIVGL 198
>AK095502-1|BAC04560.1| 197|Homo sapiens protein ( Homo sapiens
cDNA FLJ38183 fis, clone FCBBF1000155. ).
Length = 197
Score = 33.1 bits (72), Expect = 1.3
Identities = 16/38 (42%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Frame = -1
Query: 752 PWRTKSPNYFPTQATQGEEPYKK-EMVSPILDLPDNFP 642
PW+ PNYF A +P KK VS +L+ P+ FP
Sbjct: 119 PWQLNDPNYFSIDAPPSFKPAKKYSDVSGLLEPPNCFP 156
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 129,239,418
Number of Sequences: 237096
Number of extensions: 3032419
Number of successful extensions: 5494
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 5171
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5484
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 10370898348
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -