Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30587
         (827 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024852-1|AAK66027.1|  257|Caenorhabditis elegans Hypothetical ...    96   3e-20
Z73906-3|CAE45047.1|  470|Caenorhabditis elegans Hypothetical pr...    30   1.8  
Z73906-2|CAA98115.1|  586|Caenorhabditis elegans Hypothetical pr...    30   1.8  
U28409-4|AAC46590.2|  394|Caenorhabditis elegans Saposin-like pr...    29   3.1  

>AC024852-1|AAK66027.1|  257|Caenorhabditis elegans Hypothetical
           protein Y71F9AM.6 protein.
          Length = 257

 Score = 95.9 bits (228), Expect = 3e-20
 Identities = 45/98 (45%), Positives = 61/98 (62%)
 Frame = +3

Query: 273 DTTILFTKPVPSLGDLTFDIQAGYPVEFFVGFINKGSVDYVVESMEASFRYPMDYTYYIQ 452
           D  + F    PS  ++  +   G PV++ +GF NKG  D+VV+  E SFR+P D++Y++Q
Sbjct: 48  DAGLAFHFVQPSDANVVREFYTGKPVKYLIGFQNKGEKDFVVKYAETSFRFPTDHSYHLQ 107

Query: 453 NFTALPYNREVKPKQEATLPIPFIPNEAFAGRPFGLNV 566
           NFT   YNR V PK+E TL   F  +E FAGRP GL V
Sbjct: 108 NFTRGEYNRRVAPKEEVTLDYGFYAHETFAGRPVGLVV 145



 Score = 28.7 bits (61), Expect = 5.4
 Identities = 18/35 (51%), Positives = 22/35 (62%)
 Frame = +1

Query: 574 NYRDASGNAYQEAVYNQTPGNIVGKLSGRSKMGET 678
           +Y+DA GN +   VYNQT  NI+   SG S  GET
Sbjct: 148 HYQDADGNVFVNNVYNQTI-NIMEDDSGFS--GET 179


>Z73906-3|CAE45047.1|  470|Caenorhabditis elegans Hypothetical
           protein D2030.2b protein.
          Length = 470

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 14/36 (38%), Positives = 18/36 (50%)
 Frame = +1

Query: 565 YSFNYRDASGNAYQEAVYNQTPGNIVGKLSGRSKMG 672
           +S  YRD SG   Q A+     G +V   SG+  MG
Sbjct: 225 HSAAYRDVSGEGVQHALLKLVEGTVVNVKSGKKGMG 260


>Z73906-2|CAA98115.1|  586|Caenorhabditis elegans Hypothetical
           protein D2030.2a protein.
          Length = 586

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 14/36 (38%), Positives = 18/36 (50%)
 Frame = +1

Query: 565 YSFNYRDASGNAYQEAVYNQTPGNIVGKLSGRSKMG 672
           +S  YRD SG   Q A+     G +V   SG+  MG
Sbjct: 341 HSAAYRDVSGEGVQHALLKLVEGTVVNVKSGKKGMG 376


>U28409-4|AAC46590.2|  394|Caenorhabditis elegans Saposin-like
           protein family protein11 protein.
          Length = 394

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 18/61 (29%), Positives = 26/61 (42%), Gaps = 1/61 (1%)
 Frame = -1

Query: 803 LIPTVLAQIECGRSLPGPWRT-KSPNYFPTQATQGEEPYKKEMVSPILDLPDNFPTMFPG 627
           ++PT L  +E    +P    T K PN  PT     E P     + P + +P+  P   P 
Sbjct: 142 VVPTNLPTVEIPHFIPKTLPTVKIPNIIPTNFPTIETPDIIPKILPTIKIPEIIPLTLPT 201

Query: 626 V 624
           V
Sbjct: 202 V 202


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,568,443
Number of Sequences: 27780
Number of extensions: 427838
Number of successful extensions: 977
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 932
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 977
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2050970610
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)