Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30587
         (827 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X72577-1|CAA51169.1|  283|Apis mellifera Apidaecin precursor pro...    24   1.5  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              23   3.4  
AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        22   6.0  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        22   6.0  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        22   6.0  

>X72577-1|CAA51169.1|  283|Apis mellifera Apidaecin precursor
           protein.
          Length = 283

 Score = 24.2 bits (50), Expect = 1.5
 Identities = 12/27 (44%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
 Frame = -2

Query: 784 PKLNAE-EVCLVPGERRAQITSQPKPP 707
           P+L  E E+   PG  R    SQP+PP
Sbjct: 85  PRLRREAELEAEPGNNRPVYISQPRPP 111



 Score = 24.2 bits (50), Expect = 1.5
 Identities = 12/27 (44%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
 Frame = -2

Query: 784 PKLNAE-EVCLVPGERRAQITSQPKPP 707
           P+L  E E+   PG  R    SQP+PP
Sbjct: 141 PRLRREAELEAEPGNNRPVYISQPRPP 167


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 23.0 bits (47), Expect = 3.4
 Identities = 10/28 (35%), Positives = 14/28 (50%)
 Frame = +2

Query: 386 RLCSRIHGGIFPLSNGLHILHSELHRVA 469
           R C R H  +   +  ++  H ELHR A
Sbjct: 108 RKCPRRHRPVCASNGKIYANHCELHRAA 135


>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 22.2 bits (45), Expect = 6.0
 Identities = 9/29 (31%), Positives = 14/29 (48%)
 Frame = +3

Query: 426 PMDYTYYIQNFTALPYNREVKPKQEATLP 512
           P DY Y+  + + +P +   KP   A  P
Sbjct: 279 PADYRYFCPDGSKVPIDANTKPCTWAARP 307



 Score = 22.2 bits (45), Expect = 6.0
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = +3

Query: 459 TALPYNREVKPKQEATL 509
           T   Y+R+V+PK + TL
Sbjct: 403 TRAAYSRDVRPKYDCTL 419


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 22.2 bits (45), Expect = 6.0
 Identities = 9/29 (31%), Positives = 14/29 (48%)
 Frame = +3

Query: 426 PMDYTYYIQNFTALPYNREVKPKQEATLP 512
           P DY Y+  + + +P +   KP   A  P
Sbjct: 279 PADYRYFCPDGSKVPIDANTKPCTWAARP 307



 Score = 22.2 bits (45), Expect = 6.0
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = +3

Query: 459 TALPYNREVKPKQEATL 509
           T   Y+R+V+PK + TL
Sbjct: 403 TRAAYSRDVRPKYDCTL 419


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 22.2 bits (45), Expect = 6.0
 Identities = 9/29 (31%), Positives = 14/29 (48%)
 Frame = +3

Query: 426 PMDYTYYIQNFTALPYNREVKPKQEATLP 512
           P DY Y+  + + +P +   KP   A  P
Sbjct: 279 PADYRYFCPDGSKVPIDANTKPCTWAARP 307



 Score = 22.2 bits (45), Expect = 6.0
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = +3

Query: 459 TALPYNREVKPKQEATL 509
           T   Y+R+V+PK + TL
Sbjct: 403 TRAAYSRDVRPKYDCTL 419


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 245,142
Number of Sequences: 438
Number of extensions: 5794
Number of successful extensions: 17
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26460186
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)