Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30587
         (827 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g21160.1 68415.m02510 translocon-associated protein alpha (TR...    38   0.011
At5g23110.1 68418.m02703 zinc finger (C3HC4-type RING finger) fa...    29   5.0  
At3g49900.1 68416.m05455 BTB/POZ domain-containing protein conta...    28   8.7  
At1g56700.1 68414.m06521 pyrrolidone-carboxylate peptidase famil...    28   8.7  

>At2g21160.1 68415.m02510 translocon-associated protein alpha (TRAP
           alpha) family protein contains Pfam profile: PF03896
           translocon-associated protein (TRAP), alpha subunit
          Length = 258

 Score = 37.5 bits (83), Expect = 0.011
 Identities = 24/78 (30%), Positives = 32/78 (41%), Gaps = 1/78 (1%)
 Frame = +3

Query: 330 IQAGYPVEFFVGFINKGSVDYVVESMEASFRYPMDYTYYIQNFTALPYNREVKPKQ-EAT 506
           + AG   E  VG  N+G     V  + AS   P D+   +QN T L  N    P   +AT
Sbjct: 78  VPAGEETELLVGLKNEGKTRVGVMGIRASVHLPYDHKLLVQNLTMLRLNNASIPTSLQAT 137

Query: 507 LPIPFIPNEAFAGRPFGL 560
            P  F  ++      F L
Sbjct: 138 FPYIFAVSQYLQPGAFDL 155


>At5g23110.1 68418.m02703 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profile: PF00097 zinc
           finger, C3HC4 type (RING finger)
          Length = 4706

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 11/23 (47%), Positives = 12/23 (52%)
 Frame = +3

Query: 612 RLQPDTWKHCGKVIWKV*DGRDH 680
           RL P  WKH  K+ W     RDH
Sbjct: 652 RLVPAEWKHRSKISWHPESNRDH 674


>At3g49900.1 68416.m05455 BTB/POZ domain-containing protein contains
           BTB/POZ domain, INTERPRO:IPR000210
          Length = 517

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 9/22 (40%), Positives = 17/22 (77%)
 Frame = -3

Query: 441 MCSPLDSGKMPPWILLHSLRNP 376
           +C+ +D  K+ P +LLH+++NP
Sbjct: 269 ICNSIDCDKLSPPLLLHAVQNP 290


>At1g56700.1 68414.m06521 pyrrolidone-carboxylate peptidase family
           protein similar to Pyrrolidone-carboxylate peptidase
           (5-oxoprolyl- peptidase) (Pyroglutamyl-peptidase I)
           (PGP-I) (Pyrase). (Swiss-Prot:O73944) [Pyrococcus
           furiosus]; similar to Pyrrolidone-carboxylate peptidase
           (5-oxoprolyl- peptidase) (Pyroglutamyl-peptidase I)
           (PGP-I). (Swiss-Prot:O07883) [Thermococcus litoralis];
           contains Pfam PF01470: pyrrolidone-carboxylate peptidase
          Length = 219

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 13/52 (25%), Positives = 26/52 (50%), Gaps = 3/52 (5%)
 Frame = +3

Query: 369 INKGSVDYVVESM---EASFRYPMDYTYYIQNFTALPYNREVKPKQEATLPI 515
           +N G+  + +E     EA+FR P +  +  QN   +P +  +   ++  LP+
Sbjct: 93  VNSGATKFAIEQQAVNEATFRCPDELGWKPQNLPIVPSDGPISTVRKTNLPV 144


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,661,556
Number of Sequences: 28952
Number of extensions: 406387
Number of successful extensions: 986
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 954
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 986
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1902108000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)