Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30586
(817 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z80223-1|CAB02319.1| 640|Caenorhabditis elegans Hypothetical pr... 155 4e-38
M18540-1|AAA28078.1| 640|Caenorhabditis elegans protein ( C.ele... 145 3e-35
Z81467-1|CAB03871.1| 643|Caenorhabditis elegans Hypothetical pr... 136 2e-32
Z83108-5|CAB05508.1| 645|Caenorhabditis elegans Hypothetical pr... 132 2e-31
Z83108-4|CAB05507.1| 645|Caenorhabditis elegans Hypothetical pr... 132 2e-31
U56965-1|AAB52671.1| 661|Caenorhabditis elegans Heat shock prot... 130 2e-30
M26604-1|AAA28074.1| 661|Caenorhabditis elegans protein ( C. el... 127 8e-30
M28528-1|AAA28076.1| 288|Caenorhabditis elegans protein ( C.ele... 118 5e-27
AF000264-1|AAC71123.1| 657|Caenorhabditis elegans Heat shock pr... 118 5e-27
U88315-3|AAB42371.1| 657|Caenorhabditis elegans Heat shock prot... 106 2e-23
X07678-1|CAA30525.1| 487|Caenorhabditis elegans hsp6F protein. 40 0.003
AF043702-6|AAK21497.2| 306|Caenorhabditis elegans Hypothetical ... 30 2.3
Z99281-44|CAJ76963.1| 96|Caenorhabditis elegans Hypothetical p... 27 2.6
U64608-2|AAB04591.1| 537|Caenorhabditis elegans Hypothetical pr... 29 5.3
Z68159-10|CAD30432.1| 826|Caenorhabditis elegans Hypothetical p... 28 7.0
Z68159-9|CAA92282.2| 844|Caenorhabditis elegans Hypothetical pr... 28 7.0
U38377-1|AAA79747.2| 283|Caenorhabditis elegans Sox (mammalian ... 28 7.0
L09634-1|AAA27967.1| 776|Caenorhabditis elegans Hypothetical pr... 28 7.0
AF339059-1|AAL50361.1| 826|Caenorhabditis elegans Rho guanine n... 28 7.0
AF326352-1|AAL50355.1| 844|Caenorhabditis elegans putative Rho ... 28 7.0
AB060647-1|BAB43906.1| 826|Caenorhabditis elegans putative GDP-... 28 7.0
Z69904-9|CAH60797.1| 2101|Caenorhabditis elegans Hypothetical pr... 28 9.2
Z69904-8|CAD57719.1| 2392|Caenorhabditis elegans Hypothetical pr... 28 9.2
Z69904-7|CAB54502.2| 2407|Caenorhabditis elegans Hypothetical pr... 28 9.2
Z69904-6|CAB54501.3| 2211|Caenorhabditis elegans Hypothetical pr... 28 9.2
Z69383-5|CAA93413.1| 229|Caenorhabditis elegans Hypothetical pr... 28 9.2
Z68314-9|CAA92667.2| 2862|Caenorhabditis elegans Hypothetical pr... 28 9.2
Z66511-12|CAH60796.1| 2101|Caenorhabditis elegans Hypothetical p... 28 9.2
Z66511-11|CAD57694.1| 2392|Caenorhabditis elegans Hypothetical p... 28 9.2
Z66511-10|CAB54211.2| 2407|Caenorhabditis elegans Hypothetical p... 28 9.2
Z66511-9|CAB54210.3| 2211|Caenorhabditis elegans Hypothetical pr... 28 9.2
Z66497-12|CAA91289.2| 2862|Caenorhabditis elegans Hypothetical p... 28 9.2
AB223006-1|BAE16563.1| 2862|Caenorhabditis elegans Mediator comp... 28 9.2
>Z80223-1|CAB02319.1| 640|Caenorhabditis elegans Hypothetical
protein F26D10.3 protein.
Length = 640
Score = 155 bits (376), Expect = 4e-38
Identities = 74/84 (88%), Positives = 80/84 (95%)
Frame = +1
Query: 256 LIQVFEVERAMTKDNNLLGKFELTGIPPAPRGVPQIEVTFDIDANGILNVSAIEKSINKE 435
LIQV+E ERAMTKDNNLLGKFEL+GIPPAPRGVPQIEVTFDIDANGILNVSA +KS K+
Sbjct: 440 LIQVYEGERAMTKDNNLLGKFELSGIPPAPRGVPQIEVTFDIDANGILNVSATDKSTGKQ 499
Query: 436 NKITITNDKGRLSKEEIERMVNEA 507
NKITITNDKGRLSK++IERMVNEA
Sbjct: 500 NKITITNDKGRLSKDDIERMVNEA 523
Score = 83.4 bits (197), Expect = 2e-16
Identities = 45/84 (53%), Positives = 46/84 (54%)
Frame = +2
Query: 2 FNGKELNKSINPDEXXXXXXXXXXXILHGDKSEEVQDXXXXXXXXXXXGIETAGGVMTTL 181
F+GKELNKSINPDE IL GDKSE VQD GIETAGGVMT L
Sbjct: 355 FSGKELNKSINPDEAVAYGAAVQAAILSGDKSEAVQDLLLLDVAPLSLGIETAGGVMTAL 414
Query: 182 IKRNXXXXXXXXXXXXXYSDNQPG 253
IKRN YSDNQPG
Sbjct: 415 IKRNTTIPTKTAQTFTTYSDNQPG 438
Score = 53.6 bits (123), Expect = 2e-07
Identities = 23/38 (60%), Positives = 30/38 (78%)
Frame = +3
Query: 510 KYRNEDDKQKETIQAKNALESYCFSMKSTMEDEKLKGK 623
KY+ +D+ QK+ I AKN LESY F++K T+EDEKLK K
Sbjct: 525 KYKADDEAQKDRIGAKNGLESYAFNLKQTIEDEKLKDK 562
>M18540-1|AAA28078.1| 640|Caenorhabditis elegans protein (
C.elegans heat shockprotein 70A gene, complete cds. ).
Length = 640
Score = 145 bits (352), Expect = 3e-35
Identities = 70/84 (83%), Positives = 76/84 (90%)
Frame = +1
Query: 256 LIQVFEVERAMTKDNNLLGKFELTGIPPAPRGVPQIEVTFDIDANGILNVSAIEKSINKE 435
LIQV+E ERAMTKDNNLLGKFEL+GIPPAPRGVPQIEVTFDIDANGILNVSA +KS K
Sbjct: 440 LIQVYEGERAMTKDNNLLGKFELSGIPPAPRGVPQIEVTFDIDANGILNVSATDKSTGKA 499
Query: 436 NKITITNDKGRLSKEEIERMVNEA 507
+ITITNDK R SK++IERMVNEA
Sbjct: 500 KQITITNDKDRFSKDDIERMVNEA 523
Score = 83.4 bits (197), Expect = 2e-16
Identities = 45/84 (53%), Positives = 46/84 (54%)
Frame = +2
Query: 2 FNGKELNKSINPDEXXXXXXXXXXXILHGDKSEEVQDXXXXXXXXXXXGIETAGGVMTTL 181
F+GKELNKSINPDE IL GDKSE VQD GIETAGGVMT L
Sbjct: 355 FSGKELNKSINPDEALAYGAAVQAAILSGDKSEAVQDLLLLDVAPLSLGIETAGGVMTAL 414
Query: 182 IKRNXXXXXXXXXXXXXYSDNQPG 253
IKRN YSDNQPG
Sbjct: 415 IKRNTTIPTKTAQTFTTYSDNQPG 438
Score = 53.6 bits (123), Expect = 2e-07
Identities = 23/38 (60%), Positives = 30/38 (78%)
Frame = +3
Query: 510 KYRNEDDKQKETIQAKNALESYCFSMKSTMEDEKLKGK 623
KY+ +D+ QK+ I AKN LESY F++K T+EDEKLK K
Sbjct: 525 KYKADDEAQKDRIGAKNGLESYAFNLKQTIEDEKLKDK 562
>Z81467-1|CAB03871.1| 643|Caenorhabditis elegans Hypothetical
protein C12C8.1 protein.
Length = 643
Score = 136 bits (328), Expect = 2e-32
Identities = 64/94 (68%), Positives = 78/94 (82%)
Frame = +1
Query: 259 IQVFEVERAMTKDNNLLGKFELTGIPPAPRGVPQIEVTFDIDANGILNVSAIEKSINKEN 438
IQV+E ERAMT+DN+ LG FELTGIPPAPRGVPQ++VTFDIDANGILNVSA +KS + N
Sbjct: 441 IQVYEGERAMTRDNHRLGTFELTGIPPAPRGVPQVDVTFDIDANGILNVSAADKSTGRSN 500
Query: 439 KITITNDKGRLSKEEIERMVNEAGSTETRMTSKR 540
+ITI N+KGRLS+ +I+RMVNEA E ++R
Sbjct: 501 RITIRNEKGRLSQADIDRMVNEAKQFEREDAAQR 534
Score = 68.9 bits (161), Expect = 4e-12
Identities = 37/86 (43%), Positives = 43/86 (50%)
Frame = +2
Query: 2 FNGKELNKSINPDEXXXXXXXXXXXILHGDKSEEVQDXXXXXXXXXXXGIETAGGVMTTL 181
FNGK+LN SINPDE +L G K + ++D GIETAGGVMT L
Sbjct: 355 FNGKDLNCSINPDEAVAFGAAVQAAVLSGVKDDTIKDVLLVDVVPLSHGIETAGGVMTNL 414
Query: 182 IKRNXXXXXXXXXXXXXYSDNQPGDS 259
I RN Y+DNQPG S
Sbjct: 415 IDRNTRIPAKASKTFTTYADNQPGVS 440
>Z83108-5|CAB05508.1| 645|Caenorhabditis elegans Hypothetical
protein F44E5.5 protein.
Length = 645
Score = 132 bits (320), Expect = 2e-31
Identities = 65/100 (65%), Positives = 79/100 (79%)
Frame = +1
Query: 259 IQVFEVERAMTKDNNLLGKFELTGIPPAPRGVPQIEVTFDIDANGILNVSAIEKSINKEN 438
IQV+E ERAMT+DN+ LG FEL+GIPPAPRGVPQIEVTFDIDANGILNVSA +KS K N
Sbjct: 441 IQVYEGERAMTRDNHRLGTFELSGIPPAPRGVPQIEVTFDIDANGILNVSAEDKSTGKSN 500
Query: 439 KITITNDKGRLSKEEIERMVNEAGSTETRMTSKRRPSRPR 558
+ITI N+KGRL++ +I+RMV+EA E +R + R
Sbjct: 501 RITIQNEKGRLTQSDIDRMVHEAKQFEKEDGEQRERVQAR 540
Score = 71.3 bits (167), Expect = 8e-13
Identities = 39/86 (45%), Positives = 43/86 (50%)
Frame = +2
Query: 2 FNGKELNKSINPDEXXXXXXXXXXXILHGDKSEEVQDXXXXXXXXXXXGIETAGGVMTTL 181
FNGKELN SINPDE +L G K E ++D GIETAGGVMT L
Sbjct: 355 FNGKELNCSINPDEAVAFGAAVQAAVLSGVKDETIKDVLLVDVAPLSLGIETAGGVMTNL 414
Query: 182 IKRNXXXXXXXXXXXXXYSDNQPGDS 259
I RN Y+DNQPG S
Sbjct: 415 IDRNTRIPTKACKTFTTYADNQPGVS 440
Score = 37.5 bits (83), Expect = 0.011
Identities = 13/37 (35%), Positives = 25/37 (67%)
Frame = +3
Query: 507 RKYRNEDDKQKETIQAKNALESYCFSMKSTMEDEKLK 617
+++ ED +Q+E +QA+N LE+Y F +K +++ K
Sbjct: 524 KQFEKEDGEQRERVQARNQLEAYAFQIKQALDEYSSK 560
>Z83108-4|CAB05507.1| 645|Caenorhabditis elegans Hypothetical
protein F44E5.4 protein.
Length = 645
Score = 132 bits (320), Expect = 2e-31
Identities = 65/100 (65%), Positives = 79/100 (79%)
Frame = +1
Query: 259 IQVFEVERAMTKDNNLLGKFELTGIPPAPRGVPQIEVTFDIDANGILNVSAIEKSINKEN 438
IQV+E ERAMT+DN+ LG FEL+GIPPAPRGVPQIEVTFDIDANGILNVSA +KS K N
Sbjct: 441 IQVYEGERAMTRDNHRLGTFELSGIPPAPRGVPQIEVTFDIDANGILNVSAEDKSTGKSN 500
Query: 439 KITITNDKGRLSKEEIERMVNEAGSTETRMTSKRRPSRPR 558
+ITI N+KGRL++ +I+RMV+EA E +R + R
Sbjct: 501 RITIQNEKGRLTQSDIDRMVHEAKQFEKEDGEQRERVQAR 540
Score = 71.3 bits (167), Expect = 8e-13
Identities = 39/86 (45%), Positives = 43/86 (50%)
Frame = +2
Query: 2 FNGKELNKSINPDEXXXXXXXXXXXILHGDKSEEVQDXXXXXXXXXXXGIETAGGVMTTL 181
FNGKELN SINPDE +L G K E ++D GIETAGGVMT L
Sbjct: 355 FNGKELNCSINPDEAVAFGAAVQAAVLSGVKDETIKDVLLVDVAPLSLGIETAGGVMTNL 414
Query: 182 IKRNXXXXXXXXXXXXXYSDNQPGDS 259
I RN Y+DNQPG S
Sbjct: 415 IDRNTRIPTKACKTFTTYADNQPGVS 440
Score = 37.5 bits (83), Expect = 0.011
Identities = 13/37 (35%), Positives = 25/37 (67%)
Frame = +3
Query: 507 RKYRNEDDKQKETIQAKNALESYCFSMKSTMEDEKLK 617
+++ ED +Q+E +QA+N LE+Y F +K +++ K
Sbjct: 524 KQFEKEDGEQRERVQARNQLEAYAFQIKQALDEYSSK 560
>U56965-1|AAB52671.1| 661|Caenorhabditis elegans Heat shock protein
protein 3 protein.
Length = 661
Score = 130 bits (313), Expect = 2e-30
Identities = 60/83 (72%), Positives = 72/83 (86%)
Frame = +1
Query: 259 IQVFEVERAMTKDNNLLGKFELTGIPPAPRGVPQIEVTFDIDANGILNVSAIEKSINKEN 438
IQVFE ER MTKDN+ LGKF+LTG+PPAPRGVPQIEVTF+ID NGIL+V+A +K +N
Sbjct: 468 IQVFEGERPMTKDNHQLGKFDLTGLPPAPRGVPQIEVTFEIDVNGILHVTAEDKGTGNKN 527
Query: 439 KITITNDKGRLSKEEIERMVNEA 507
KITITND+ RLS E+IERM+N+A
Sbjct: 528 KITITNDQNRLSPEDIERMINDA 550
Score = 49.2 bits (112), Expect = 3e-06
Identities = 29/83 (34%), Positives = 37/83 (44%)
Frame = +2
Query: 2 FNGKELNKSINPDEXXXXXXXXXXXILHGDKSEEVQDXXXXXXXXXXXGIETAGGVMTTL 181
FNGKE ++ INPDE ++ G+ E+ + GIET GGVMT L
Sbjct: 384 FNGKEPSRGINPDEAVAYGAAVQGGVISGE--EDTGEIVLLDVNPLTMGIETVGGVMTKL 441
Query: 182 IKRNXXXXXXXXXXXXXYSDNQP 250
I RN +DNQP
Sbjct: 442 IGRNTVIPTKKSQVFSTAADNQP 464
Score = 40.3 bits (90), Expect = 0.002
Identities = 18/39 (46%), Positives = 28/39 (71%), Gaps = 1/39 (2%)
Frame = +3
Query: 510 KYRNEDDKQKETIQAKNALESYCFSMKSTMED-EKLKGK 623
K+ +D K K+ +A+N LESY +++K+ +ED EKL GK
Sbjct: 552 KFAEDDKKVKDKAEARNELESYAYNLKNQIEDKEKLGGK 590
>M26604-1|AAA28074.1| 661|Caenorhabditis elegans protein ( C.
elegans BiP (hsp3)gene, complete cds. ).
Length = 661
Score = 127 bits (307), Expect = 8e-30
Identities = 59/83 (71%), Positives = 71/83 (85%)
Frame = +1
Query: 259 IQVFEVERAMTKDNNLLGKFELTGIPPAPRGVPQIEVTFDIDANGILNVSAIEKSINKEN 438
IQVFE ER MTKDN+ LGKF+LTG+PPAPRGVPQIEVTF+ID NGIL+V+A +K +N
Sbjct: 468 IQVFEGERPMTKDNHQLGKFDLTGLPPAPRGVPQIEVTFEIDVNGILHVTAEDKGTGNKN 527
Query: 439 KITITNDKGRLSKEEIERMVNEA 507
KITITND+ RLS E+IE M+N+A
Sbjct: 528 KITITNDQNRLSPEDIEAMINDA 550
Score = 49.2 bits (112), Expect = 3e-06
Identities = 29/83 (34%), Positives = 37/83 (44%)
Frame = +2
Query: 2 FNGKELNKSINPDEXXXXXXXXXXXILHGDKSEEVQDXXXXXXXXXXXGIETAGGVMTTL 181
FNGKE ++ INPDE ++ G+ E+ + GIET GGVMT L
Sbjct: 384 FNGKEPSRGINPDEAVAYGAAVQGGVISGE--EDTGEIVLLDVNPLTMGIETVGGVMTKL 441
Query: 182 IKRNXXXXXXXXXXXXXYSDNQP 250
I RN +DNQP
Sbjct: 442 IGRNTVIPTKKSQVFSTAADNQP 464
Score = 40.3 bits (90), Expect = 0.002
Identities = 18/39 (46%), Positives = 28/39 (71%), Gaps = 1/39 (2%)
Frame = +3
Query: 510 KYRNEDDKQKETIQAKNALESYCFSMKSTMED-EKLKGK 623
K+ +D K K+ +A+N LESY +++K+ +ED EKL GK
Sbjct: 552 KFAEDDKKVKDKAEARNELESYAYNLKNQIEDKEKLGGK 590
>M28528-1|AAA28076.1| 288|Caenorhabditis elegans protein (
C.elegans heat shockprotein 4 gene, 3' end. ).
Length = 288
Score = 118 bits (284), Expect = 5e-27
Identities = 54/83 (65%), Positives = 67/83 (80%)
Frame = +1
Query: 259 IQVFEVERAMTKDNNLLGKFELTGIPPAPRGVPQIEVTFDIDANGILNVSAIEKSINKEN 438
I ++E ER M DN+ LG F++TGIPPAPRGVPQIEVTF+ID NGIL+VSA +K +N
Sbjct: 96 IVIYEGERPMVMDNHKLGNFDVTGIPPAPRGVPQIEVTFEIDVNGILHVSAEDKGTGNKN 155
Query: 439 KITITNDKGRLSKEEIERMVNEA 507
K+TITND RLS E+IERM+N+A
Sbjct: 156 KLTITNDHNRLSPEDIERMINDA 178
Score = 44.0 bits (99), Expect = 1e-04
Identities = 26/64 (40%), Positives = 30/64 (46%)
Frame = +2
Query: 2 FNGKELNKSINPDEXXXXXXXXXXXILHGDKSEEVQDXXXXXXXXXXXGIETAGGVMTTL 181
FNGKE ++ INPDE ++ G E D GIET GGVMT L
Sbjct: 12 FNGKEPSRGINPDEAVAYGAAVQAGVIGG--VENTGDVVLLDVNPLTLGIETVGGVMTKL 69
Query: 182 IKRN 193
I RN
Sbjct: 70 IGRN 73
Score = 37.5 bits (83), Expect = 0.011
Identities = 16/39 (41%), Positives = 27/39 (69%), Gaps = 1/39 (2%)
Frame = +3
Query: 510 KYRNEDDKQKETIQAKNALESYCFSMKSTMED-EKLKGK 623
K+ +D QKE ++++N LE+Y + +K+ + D EKL GK
Sbjct: 180 KFAADDQAQKEKVESRNELEAYAYQIKTQIADKEKLGGK 218
>AF000264-1|AAC71123.1| 657|Caenorhabditis elegans Heat shock
protein protein 4 protein.
Length = 657
Score = 118 bits (284), Expect = 5e-27
Identities = 54/83 (65%), Positives = 67/83 (80%)
Frame = +1
Query: 259 IQVFEVERAMTKDNNLLGKFELTGIPPAPRGVPQIEVTFDIDANGILNVSAIEKSINKEN 438
I ++E ER M DN+ LG F++TGIPPAPRGVPQIEVTF+ID NGIL+VSA +K +N
Sbjct: 465 IVIYEGERPMVMDNHKLGNFDVTGIPPAPRGVPQIEVTFEIDVNGILHVSAEDKGTGNKN 524
Query: 439 KITITNDKGRLSKEEIERMVNEA 507
K+TITND RLS E+IERM+N+A
Sbjct: 525 KLTITNDHNRLSPEDIERMINDA 547
Score = 44.0 bits (99), Expect = 1e-04
Identities = 26/64 (40%), Positives = 30/64 (46%)
Frame = +2
Query: 2 FNGKELNKSINPDEXXXXXXXXXXXILHGDKSEEVQDXXXXXXXXXXXGIETAGGVMTTL 181
FNGKE ++ INPDE ++ G E D GIET GGVMT L
Sbjct: 381 FNGKEPSRGINPDEAVAYGAAVQAGVIGG--VENTGDVVLLDVNPLTLGIETVGGVMTKL 438
Query: 182 IKRN 193
I RN
Sbjct: 439 IGRN 442
Score = 39.1 bits (87), Expect = 0.004
Identities = 17/39 (43%), Positives = 27/39 (69%), Gaps = 1/39 (2%)
Frame = +3
Query: 510 KYRNEDDKQKETIQAKNALESYCFSMKSTMED-EKLKGK 623
K+ +D QKE ++++N LE+Y + MK+ + D EKL GK
Sbjct: 549 KFAADDQAQKEKVESRNELEAYAYQMKTQIADKEKLGGK 587
>U88315-3|AAB42371.1| 657|Caenorhabditis elegans Heat shock protein
protein 6 protein.
Length = 657
Score = 106 bits (254), Expect = 2e-23
Identities = 52/87 (59%), Positives = 64/87 (73%)
Frame = +1
Query: 247 TRRLIQVFEVERAMTKDNNLLGKFELTGIPPAPRGVPQIEVTFDIDANGILNVSAIEKSI 426
T+ I+VF+ ER M N LLG+F L GIPPAPRGVPQ+EVTFDIDANGI+NVSA ++
Sbjct: 459 TQVQIKVFQGEREMATSNKLLGQFSLVGIPPAPRGVPQVEVTFDIDANGIVNVSARDRGT 518
Query: 427 NKENKITITNDKGRLSKEEIERMVNEA 507
KE +I I G LSK++IE M+ EA
Sbjct: 519 GKEQQIVI-QSSGGLSKDQIENMIKEA 544
Score = 39.5 bits (88), Expect = 0.003
Identities = 24/62 (38%), Positives = 29/62 (46%)
Frame = +2
Query: 8 GKELNKSINPDEXXXXXXXXXXXILHGDKSEEVQDXXXXXXXXXXXGIETAGGVMTTLIK 187
GK +K++NPDE +L GD V D GIET GG+MT LI
Sbjct: 383 GKVPSKAVNPDEAVAMGAAIQGAVLAGD----VTDVLLLDVTPLSLGIETLGGIMTKLIT 438
Query: 188 RN 193
RN
Sbjct: 439 RN 440
>X07678-1|CAA30525.1| 487|Caenorhabditis elegans hsp6F protein.
Length = 487
Score = 39.5 bits (88), Expect = 0.003
Identities = 24/62 (38%), Positives = 29/62 (46%)
Frame = +2
Query: 8 GKELNKSINPDEXXXXXXXXXXXILHGDKSEEVQDXXXXXXXXXXXGIETAGGVMTTLIK 187
GK +K++NPDE +L GD V D GIET GG+MT LI
Sbjct: 383 GKVPSKAVNPDEAVAMGAAIQGAVLAGD----VTDVLLLDVTPLSLGIETLGGIMTKLIT 438
Query: 188 RN 193
RN
Sbjct: 439 RN 440
Score = 31.9 bits (69), Expect = 0.56
Identities = 15/29 (51%), Positives = 19/29 (65%)
Frame = +1
Query: 247 TRRLIQVFEVERAMTKDNNLLGKFELTGI 333
T+ I+VF+ ER M N LLG+F L GI
Sbjct: 459 TQVQIKVFQGEREMATSNKLLGQFSLVGI 487
>AF043702-6|AAK21497.2| 306|Caenorhabditis elegans Hypothetical
protein W03D8.2 protein.
Length = 306
Score = 29.9 bits (64), Expect = 2.3
Identities = 21/53 (39%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Frame = -1
Query: 250 GLVIRVGGECLSLFSGDGSVTLDECGHDTSSS-LNTEGKGCYIKQQQILHLLR 95
G V+R GG +SLFS L+ GH +SS L E G +K +Q+L+ R
Sbjct: 223 GCVLRFGGRLISLFS-----ALNYEGHKNNSSVLKLEFVGQRVKVKQVLYRCR 270
>Z99281-44|CAJ76963.1| 96|Caenorhabditis elegans Hypothetical
protein Y57G11C.52 protein.
Length = 96
Score = 26.6 bits (56), Expect(2) = 2.6
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +1
Query: 445 TITNDKGRLSKEEIERMVNEAGSTET 522
T N G LSKEE++ M++E+ T
Sbjct: 70 TCVNGLGCLSKEEVQMMIDESNKPRT 95
Score = 21.8 bits (44), Expect(2) = 2.6
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = +1
Query: 250 RRLIQVFEVERAMTKDNNLLGKFELTGI 333
RRL Q EVE+ + DN G+ + G+
Sbjct: 48 RRLSQPIEVEKELCIDNCKAGETCVNGL 75
>U64608-2|AAB04591.1| 537|Caenorhabditis elegans Hypothetical
protein T22B7.4 protein.
Length = 537
Score = 28.7 bits (61), Expect = 5.3
Identities = 14/34 (41%), Positives = 22/34 (64%), Gaps = 2/34 (5%)
Frame = +3
Query: 507 RKYRNEDDKQKETIQAKNALESYCFS--MKSTME 602
+K+RN+DDK+ + ++ N LE S M+ST E
Sbjct: 463 KKHRNKDDKRVDDVEDSNDLEENASSAPMRSTSE 496
>Z68159-10|CAD30432.1| 826|Caenorhabditis elegans Hypothetical
protein C33D9.1b protein.
Length = 826
Score = 28.3 bits (60), Expect = 7.0
Identities = 11/35 (31%), Positives = 20/35 (57%)
Frame = +2
Query: 617 GKKISDSDKQTILDKCTTTIQVAGIPTSLADKGGV 721
G++ ++S K I D CT + + GIP S + + +
Sbjct: 672 GRRRNESKKHRICDTCTKNMDLDGIPRSFSTQSNM 706
>Z68159-9|CAA92282.2| 844|Caenorhabditis elegans Hypothetical
protein C33D9.1a protein.
Length = 844
Score = 28.3 bits (60), Expect = 7.0
Identities = 11/35 (31%), Positives = 20/35 (57%)
Frame = +2
Query: 617 GKKISDSDKQTILDKCTTTIQVAGIPTSLADKGGV 721
G++ ++S K I D CT + + GIP S + + +
Sbjct: 672 GRRRNESKKHRICDTCTKNMDLDGIPRSFSTQSNM 706
>U38377-1|AAA79747.2| 283|Caenorhabditis elegans Sox (mammalian sry
box) familyprotein 2, isoform a protein.
Length = 283
Score = 28.3 bits (60), Expect = 7.0
Identities = 18/77 (23%), Positives = 32/77 (41%), Gaps = 1/77 (1%)
Frame = +1
Query: 451 TNDKGRLSKEEIERMVNEAGSTETRMTSKRRPSRPRMHWNLTASA*SLPWRMRSSREKDL 630
T G+ + + ++R +N K P+MH + + W+M S +EK
Sbjct: 49 TGKDGKKNDDRVKRPMNAFMVWSRGQRKKMALENPKMHNSEISKRLGTEWKMLSEQEKRP 108
Query: 631 *L*QADHPRQVH-DHHP 678
+ +A R +H HP
Sbjct: 109 FIDEAKRLRAIHMKEHP 125
>L09634-1|AAA27967.1| 776|Caenorhabditis elegans Hypothetical
protein C30C11.4 protein.
Length = 776
Score = 28.3 bits (60), Expect = 7.0
Identities = 10/31 (32%), Positives = 18/31 (58%)
Frame = +3
Query: 516 RNEDDKQKETIQAKNALESYCFSMKSTMEDE 608
+ D ++K AKN+LE Y + M+ + D+
Sbjct: 564 QESDAREKAKADAKNSLEEYVYEMRDKVSDQ 594
>AF339059-1|AAL50361.1| 826|Caenorhabditis elegans Rho guanine
nucleotide exchangefactor FGD-1 protein.
Length = 826
Score = 28.3 bits (60), Expect = 7.0
Identities = 11/35 (31%), Positives = 20/35 (57%)
Frame = +2
Query: 617 GKKISDSDKQTILDKCTTTIQVAGIPTSLADKGGV 721
G++ ++S K I D CT + + GIP S + + +
Sbjct: 672 GRRRNESKKHRICDTCTKNMDLDGIPRSFSTQSNM 706
>AF326352-1|AAL50355.1| 844|Caenorhabditis elegans putative Rho
guanine nucleotideexchange factor FGD-1 protein.
Length = 844
Score = 28.3 bits (60), Expect = 7.0
Identities = 11/35 (31%), Positives = 20/35 (57%)
Frame = +2
Query: 617 GKKISDSDKQTILDKCTTTIQVAGIPTSLADKGGV 721
G++ ++S K I D CT + + GIP S + + +
Sbjct: 672 GRRRNESKKHRICDTCTKNMDLDGIPRSFSTQSNM 706
>AB060647-1|BAB43906.1| 826|Caenorhabditis elegans putative GDP-GTP
exchange factor protein.
Length = 826
Score = 28.3 bits (60), Expect = 7.0
Identities = 11/35 (31%), Positives = 20/35 (57%)
Frame = +2
Query: 617 GKKISDSDKQTILDKCTTTIQVAGIPTSLADKGGV 721
G++ ++S K I D CT + + GIP S + + +
Sbjct: 672 GRRRNESKKHRICDTCTKNMDLDGIPRSFSTQSNM 706
>Z69904-9|CAH60797.1| 2101|Caenorhabditis elegans Hypothetical protein
F07A11.6e protein.
Length = 2101
Score = 27.9 bits (59), Expect = 9.2
Identities = 33/128 (25%), Positives = 56/128 (43%), Gaps = 7/128 (5%)
Frame = +1
Query: 409 AIEKSINKENKITITNDKGRLSKEEIERMVNEAGSTETRMTSKRRPSRPRMHWNLTASA* 588
++ +S ++ K+ +KG L+ + N+AG + ++ R +R R +LTA +
Sbjct: 968 SLSESADQRLKVLKEREKGELTTSSDDEDHNDAGEIHQQRLTEDRENRKRQK-SLTAYS- 1025
Query: 589 SLPWRMRSSREKDL*L*QADHPRQVHDHHPSGW----DSNQLGRQ---RRSYEHQAGKNL 747
S R + K + + D HP GW D Q R+ RRS E ++ KN
Sbjct: 1026 SDEQGERKNVPKRM---RRDDSEDAAAKHP-GWSAKDDQKQRKRKLEHRRSSEDESKKNA 1081
Query: 748 GKGILQIP 771
+ IP
Sbjct: 1082 KRDFRDIP 1089
>Z69904-8|CAD57719.1| 2392|Caenorhabditis elegans Hypothetical protein
F07A11.6c protein.
Length = 2392
Score = 27.9 bits (59), Expect = 9.2
Identities = 33/128 (25%), Positives = 56/128 (43%), Gaps = 7/128 (5%)
Frame = +1
Query: 409 AIEKSINKENKITITNDKGRLSKEEIERMVNEAGSTETRMTSKRRPSRPRMHWNLTASA* 588
++ +S ++ K+ +KG L+ + N+AG + ++ R +R R +LTA +
Sbjct: 1259 SLSESADQRLKVLKEREKGELTTSSDDEDHNDAGEIHQQRLTEDRENRKRQK-SLTAYS- 1316
Query: 589 SLPWRMRSSREKDL*L*QADHPRQVHDHHPSGW----DSNQLGRQ---RRSYEHQAGKNL 747
S R + K + + D HP GW D Q R+ RRS E ++ KN
Sbjct: 1317 SDEQGERKNVPKRM---RRDDSEDAAAKHP-GWSAKDDQKQRKRKLEHRRSSEDESKKNA 1372
Query: 748 GKGILQIP 771
+ IP
Sbjct: 1373 KRDFRDIP 1380
>Z69904-7|CAB54502.2| 2407|Caenorhabditis elegans Hypothetical protein
F07A11.6b protein.
Length = 2407
Score = 27.9 bits (59), Expect = 9.2
Identities = 33/128 (25%), Positives = 56/128 (43%), Gaps = 7/128 (5%)
Frame = +1
Query: 409 AIEKSINKENKITITNDKGRLSKEEIERMVNEAGSTETRMTSKRRPSRPRMHWNLTASA* 588
++ +S ++ K+ +KG L+ + N+AG + ++ R +R R +LTA +
Sbjct: 1274 SLSESADQRLKVLKEREKGELTTSSDDEDHNDAGEIHQQRLTEDRENRKRQK-SLTAYS- 1331
Query: 589 SLPWRMRSSREKDL*L*QADHPRQVHDHHPSGW----DSNQLGRQ---RRSYEHQAGKNL 747
S R + K + + D HP GW D Q R+ RRS E ++ KN
Sbjct: 1332 SDEQGERKNVPKRM---RRDDSEDAAAKHP-GWSAKDDQKQRKRKLEHRRSSEDESKKNA 1387
Query: 748 GKGILQIP 771
+ IP
Sbjct: 1388 KRDFRDIP 1395
>Z69904-6|CAB54501.3| 2211|Caenorhabditis elegans Hypothetical protein
F07A11.6a protein.
Length = 2211
Score = 27.9 bits (59), Expect = 9.2
Identities = 33/128 (25%), Positives = 56/128 (43%), Gaps = 7/128 (5%)
Frame = +1
Query: 409 AIEKSINKENKITITNDKGRLSKEEIERMVNEAGSTETRMTSKRRPSRPRMHWNLTASA* 588
++ +S ++ K+ +KG L+ + N+AG + ++ R +R R +LTA +
Sbjct: 1274 SLSESADQRLKVLKEREKGELTTSSDDEDHNDAGEIHQQRLTEDRENRKRQK-SLTAYS- 1331
Query: 589 SLPWRMRSSREKDL*L*QADHPRQVHDHHPSGW----DSNQLGRQ---RRSYEHQAGKNL 747
S R + K + + D HP GW D Q R+ RRS E ++ KN
Sbjct: 1332 SDEQGERKNVPKRM---RRDDSEDAAAKHP-GWSAKDDQKQRKRKLEHRRSSEDESKKNA 1387
Query: 748 GKGILQIP 771
+ IP
Sbjct: 1388 KRDFRDIP 1395
>Z69383-5|CAA93413.1| 229|Caenorhabditis elegans Hypothetical
protein F13E9.10 protein.
Length = 229
Score = 27.9 bits (59), Expect = 9.2
Identities = 11/18 (61%), Positives = 12/18 (66%)
Frame = +3
Query: 756 HFTNPDNFRRLLPRGARR 809
HF DNFRR+L ARR
Sbjct: 61 HFEEQDNFRRILSNNARR 78
>Z68314-9|CAA92667.2| 2862|Caenorhabditis elegans Hypothetical
protein K08F8.6 protein.
Length = 2862
Score = 27.9 bits (59), Expect = 9.2
Identities = 15/63 (23%), Positives = 29/63 (46%), Gaps = 2/63 (3%)
Frame = +1
Query: 343 PRGVPQIEVTFDIDANGILNVSAIEKSINKENK--ITITNDKGRLSKEEIERMVNEAGST 516
P+G+P+IEV D + + + + + N + K + IT + + E M + +
Sbjct: 672 PKGIPEIEVDKDFELHNDIKIPKVPNDDNYKPKSFLPITYLTNNVDNNDFESMPGDDDMS 731
Query: 517 ETR 525
E R
Sbjct: 732 EER 734
>Z66511-12|CAH60796.1| 2101|Caenorhabditis elegans Hypothetical
protein F07A11.6e protein.
Length = 2101
Score = 27.9 bits (59), Expect = 9.2
Identities = 33/128 (25%), Positives = 56/128 (43%), Gaps = 7/128 (5%)
Frame = +1
Query: 409 AIEKSINKENKITITNDKGRLSKEEIERMVNEAGSTETRMTSKRRPSRPRMHWNLTASA* 588
++ +S ++ K+ +KG L+ + N+AG + ++ R +R R +LTA +
Sbjct: 968 SLSESADQRLKVLKEREKGELTTSSDDEDHNDAGEIHQQRLTEDRENRKRQK-SLTAYS- 1025
Query: 589 SLPWRMRSSREKDL*L*QADHPRQVHDHHPSGW----DSNQLGRQ---RRSYEHQAGKNL 747
S R + K + + D HP GW D Q R+ RRS E ++ KN
Sbjct: 1026 SDEQGERKNVPKRM---RRDDSEDAAAKHP-GWSAKDDQKQRKRKLEHRRSSEDESKKNA 1081
Query: 748 GKGILQIP 771
+ IP
Sbjct: 1082 KRDFRDIP 1089
>Z66511-11|CAD57694.1| 2392|Caenorhabditis elegans Hypothetical
protein F07A11.6c protein.
Length = 2392
Score = 27.9 bits (59), Expect = 9.2
Identities = 33/128 (25%), Positives = 56/128 (43%), Gaps = 7/128 (5%)
Frame = +1
Query: 409 AIEKSINKENKITITNDKGRLSKEEIERMVNEAGSTETRMTSKRRPSRPRMHWNLTASA* 588
++ +S ++ K+ +KG L+ + N+AG + ++ R +R R +LTA +
Sbjct: 1259 SLSESADQRLKVLKEREKGELTTSSDDEDHNDAGEIHQQRLTEDRENRKRQK-SLTAYS- 1316
Query: 589 SLPWRMRSSREKDL*L*QADHPRQVHDHHPSGW----DSNQLGRQ---RRSYEHQAGKNL 747
S R + K + + D HP GW D Q R+ RRS E ++ KN
Sbjct: 1317 SDEQGERKNVPKRM---RRDDSEDAAAKHP-GWSAKDDQKQRKRKLEHRRSSEDESKKNA 1372
Query: 748 GKGILQIP 771
+ IP
Sbjct: 1373 KRDFRDIP 1380
>Z66511-10|CAB54211.2| 2407|Caenorhabditis elegans Hypothetical
protein F07A11.6b protein.
Length = 2407
Score = 27.9 bits (59), Expect = 9.2
Identities = 33/128 (25%), Positives = 56/128 (43%), Gaps = 7/128 (5%)
Frame = +1
Query: 409 AIEKSINKENKITITNDKGRLSKEEIERMVNEAGSTETRMTSKRRPSRPRMHWNLTASA* 588
++ +S ++ K+ +KG L+ + N+AG + ++ R +R R +LTA +
Sbjct: 1274 SLSESADQRLKVLKEREKGELTTSSDDEDHNDAGEIHQQRLTEDRENRKRQK-SLTAYS- 1331
Query: 589 SLPWRMRSSREKDL*L*QADHPRQVHDHHPSGW----DSNQLGRQ---RRSYEHQAGKNL 747
S R + K + + D HP GW D Q R+ RRS E ++ KN
Sbjct: 1332 SDEQGERKNVPKRM---RRDDSEDAAAKHP-GWSAKDDQKQRKRKLEHRRSSEDESKKNA 1387
Query: 748 GKGILQIP 771
+ IP
Sbjct: 1388 KRDFRDIP 1395
>Z66511-9|CAB54210.3| 2211|Caenorhabditis elegans Hypothetical protein
F07A11.6a protein.
Length = 2211
Score = 27.9 bits (59), Expect = 9.2
Identities = 33/128 (25%), Positives = 56/128 (43%), Gaps = 7/128 (5%)
Frame = +1
Query: 409 AIEKSINKENKITITNDKGRLSKEEIERMVNEAGSTETRMTSKRRPSRPRMHWNLTASA* 588
++ +S ++ K+ +KG L+ + N+AG + ++ R +R R +LTA +
Sbjct: 1274 SLSESADQRLKVLKEREKGELTTSSDDEDHNDAGEIHQQRLTEDRENRKRQK-SLTAYS- 1331
Query: 589 SLPWRMRSSREKDL*L*QADHPRQVHDHHPSGW----DSNQLGRQ---RRSYEHQAGKNL 747
S R + K + + D HP GW D Q R+ RRS E ++ KN
Sbjct: 1332 SDEQGERKNVPKRM---RRDDSEDAAAKHP-GWSAKDDQKQRKRKLEHRRSSEDESKKNA 1387
Query: 748 GKGILQIP 771
+ IP
Sbjct: 1388 KRDFRDIP 1395
>Z66497-12|CAA91289.2| 2862|Caenorhabditis elegans Hypothetical
protein K08F8.6 protein.
Length = 2862
Score = 27.9 bits (59), Expect = 9.2
Identities = 15/63 (23%), Positives = 29/63 (46%), Gaps = 2/63 (3%)
Frame = +1
Query: 343 PRGVPQIEVTFDIDANGILNVSAIEKSINKENK--ITITNDKGRLSKEEIERMVNEAGST 516
P+G+P+IEV D + + + + + N + K + IT + + E M + +
Sbjct: 672 PKGIPEIEVDKDFELHNDIKIPKVPNDDNYKPKSFLPITYLTNNVDNNDFESMPGDDDMS 731
Query: 517 ETR 525
E R
Sbjct: 732 EER 734
>AB223006-1|BAE16563.1| 2862|Caenorhabditis elegans Mediator complex
subunit Med13 protein.
Length = 2862
Score = 27.9 bits (59), Expect = 9.2
Identities = 15/63 (23%), Positives = 29/63 (46%), Gaps = 2/63 (3%)
Frame = +1
Query: 343 PRGVPQIEVTFDIDANGILNVSAIEKSINKENK--ITITNDKGRLSKEEIERMVNEAGST 516
P+G+P+IEV D + + + + + N + K + IT + + E M + +
Sbjct: 672 PKGIPEIEVDKDFELHNDIKIPKVPNDDNYKPKSFLPITYLTNNVDNNDFESMPGDDDMS 731
Query: 517 ETR 525
E R
Sbjct: 732 EER 734
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,726,091
Number of Sequences: 27780
Number of extensions: 396498
Number of successful extensions: 1370
Number of sequences better than 10.0: 33
Number of HSP's better than 10.0 without gapping: 1248
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1365
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2008899418
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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