Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30585
         (814 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_UPI0000D56709 Cluster: PREDICTED: similar to Dihydrofol...    36   1.6  
UniRef50_Q28LH0 Cluster: Putative uncharacterized protein; n=1; ...    36   1.6  
UniRef50_Q5CWE0 Cluster: Putative uncharacterized protein; n=1; ...    35   2.8  
UniRef50_Q22KN1 Cluster: Putative uncharacterized protein; n=1; ...    35   2.8  
UniRef50_Q1K9C4 Cluster: Ubiquitin-protein ligase E3; n=1; Schiz...    34   4.9  
UniRef50_A7S220 Cluster: Predicted protein; n=1; Nematostella ve...    33   6.5  

>UniRef50_UPI0000D56709 Cluster: PREDICTED: similar to Dihydrofolate
           reductase; n=2; Endopterygota|Rep: PREDICTED: similar to
           Dihydrofolate reductase - Tribolium castaneum
          Length = 189

 Score = 35.5 bits (78), Expect = 1.6
 Identities = 15/34 (44%), Positives = 23/34 (67%)
 Frame = +1

Query: 358 TVQCETFKTKSEGELVEIKNPRFPHKNTQEESGI 459
           T  C+TF  K   +L+E+++PR P +  QEE+GI
Sbjct: 142 TFDCDTFFPKIRDDLIEVRDPRVP-EGVQEENGI 174


>UniRef50_Q28LH0 Cluster: Putative uncharacterized protein; n=1;
           Jannaschia sp. CCS1|Rep: Putative uncharacterized
           protein - Jannaschia sp. (strain CCS1)
          Length = 185

 Score = 35.5 bits (78), Expect = 1.6
 Identities = 22/73 (30%), Positives = 37/73 (50%)
 Frame = +2

Query: 38  AAPDAAIHELTFVDNEIETIHPNSLGFIGQAEAHSANSIKYKNNYYGERCHCNISQVLKR 217
           A  D+++ +L+ +D  + T  P+S  F   A    A  ++ K N  GER  CN+ + L +
Sbjct: 70  AGKDSSVLDLSIID--LATFQPDSPIFFDHAYLELATLLR-KLNQLGERRWCNLVEGLSK 126

Query: 218 SLNVVSIEPYEFG 256
             +   +EP E G
Sbjct: 127 ECSEQKVEPSERG 139


>UniRef50_Q5CWE0 Cluster: Putative uncharacterized protein; n=1;
           Cryptosporidium parvum Iowa II|Rep: Putative
           uncharacterized protein - Cryptosporidium parvum Iowa II
          Length = 648

 Score = 34.7 bits (76), Expect = 2.8
 Identities = 18/59 (30%), Positives = 33/59 (55%)
 Frame = -1

Query: 685 EKIERALIKAPATSHYRGKILEQNAPQLEFVDRNDLMLTQLPRRRRHLMKLTNIAIMTH 509
           E++E+ ++  P T+HY+GK L++ A   +   R D    +  RR + L+   N  I+T+
Sbjct: 164 EQVEKEVMYRPFTTHYQGKTLQEKADLQK--RRKDKAHEREIRRNKRLLDAVNSGILTY 220


>UniRef50_Q22KN1 Cluster: Putative uncharacterized protein; n=1;
            Tetrahymena thermophila SB210|Rep: Putative
            uncharacterized protein - Tetrahymena thermophila SB210
          Length = 1441

 Score = 34.7 bits (76), Expect = 2.8
 Identities = 19/55 (34%), Positives = 30/55 (54%)
 Frame = +2

Query: 77   DNEIETIHPNSLGFIGQAEAHSANSIKYKNNYYGERCHCNISQVLKRSLNVVSIE 241
            DN+  TI+PNS+GFI +  +  + +I + +N      HC   Q LK + N  + E
Sbjct: 942  DNQYSTINPNSVGFINKHASQVSTNIAFSSN------HCEDIQELKFNKNYANDE 990


>UniRef50_Q1K9C4 Cluster: Ubiquitin-protein ligase E3; n=1;
           Schizosaccharomyces pombe|Rep: Ubiquitin-protein ligase
           E3 - Schizosaccharomyces pombe (Fission yeast)
          Length = 1029

 Score = 33.9 bits (74), Expect = 4.9
 Identities = 21/81 (25%), Positives = 37/81 (45%)
 Frame = +3

Query: 510 CVIIAMFVSFIKCLRRRGNCVNIKSFLSTNSSCGAFCSRILPL*WEVAGALINARSIFSI 689
           C+   + +  IK     GNC+++      NSS   FCS IL   +  +G  +N+R    I
Sbjct: 297 CISSLLNLGMIKVFSLAGNCLHLLHTEYKNSSLWKFCSYILDALYVFSGESVNSR----I 352

Query: 690 YPVNGITSGKDHSD*MEPSYF 752
             V+ +   +D  +    +Y+
Sbjct: 353 QVVSDVDDDEDDENAFSQNYY 373


>UniRef50_A7S220 Cluster: Predicted protein; n=1; Nematostella
           vectensis|Rep: Predicted protein - Nematostella
           vectensis
          Length = 300

 Score = 33.5 bits (73), Expect = 6.5
 Identities = 17/66 (25%), Positives = 36/66 (54%), Gaps = 2/66 (3%)
 Frame = +1

Query: 304 EQNMLFKKFLDGVCTEKPTVQCETFKTKSEGELVEIKNPRFPHKNTQE--ESGISERDKK 477
           ++ +LFK  +  +C + P+V C+ F TK + E   I       + T++   S IS++D+ 
Sbjct: 205 QEELLFKDSISTLCEKNPSVTCKFFVTKEKLERDMIDKYTQTGRITEDSLRSAISDKDRS 264

Query: 478 IIGIVI 495
            + +++
Sbjct: 265 TLRVLL 270


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 780,104,971
Number of Sequences: 1657284
Number of extensions: 14912974
Number of successful extensions: 38915
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 37463
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 38906
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 70377768045
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)