Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30585
         (814 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC167.07c ||SPAC57A7.03c|ubiquitin-protein ligase E3 |Schizosa...    34   0.028
SPAC3A11.05c |kms1||meiotic spindle pole body protein Kms1|Schiz...    27   3.2  
SPBP8B7.19 |spt16||FACT complex component Spt16|Schizosaccharomy...    26   5.5  
SPBC2G2.02 |syj1||inositol-polyphosphate 5-phosphatase |Schizosa...    26   5.5  
SPAC10F6.13c |||aspartate aminotransferase |Schizosaccharomyces ...    26   5.5  
SPAC2E12.02 |hsf1|hstf, hsf|transcription factor Hsf1|Schizosacc...    26   5.5  

>SPAC167.07c ||SPAC57A7.03c|ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1029

 Score = 33.9 bits (74), Expect = 0.028
 Identities = 21/81 (25%), Positives = 37/81 (45%)
 Frame = +3

Query: 510 CVIIAMFVSFIKCLRRRGNCVNIKSFLSTNSSCGAFCSRILPL*WEVAGALINARSIFSI 689
           C+   + +  IK     GNC+++      NSS   FCS IL   +  +G  +N+R    I
Sbjct: 297 CISSLLNLGMIKVFSLAGNCLHLLHTEYKNSSLWKFCSYILDALYVFSGESVNSR----I 352

Query: 690 YPVNGITSGKDHSD*MEPSYF 752
             V+ +   +D  +    +Y+
Sbjct: 353 QVVSDVDDDEDDENAFSQNYY 373


>SPAC3A11.05c |kms1||meiotic spindle pole body protein
           Kms1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 607

 Score = 27.1 bits (57), Expect = 3.2
 Identities = 19/77 (24%), Positives = 33/77 (42%)
 Frame = +2

Query: 128 AEAHSANSIKYKNNYYGERCHCNISQVLKRSLNVVSIEPYEFGVTVLSMNSSRVALTNLN 307
           A  HS NS   K++        N SQ++ + L++  +  +     V  + +     T LN
Sbjct: 108 ANEHSVNSAHSKSSSNASPESLNPSQMMSKRLSLPPMSQFTDSDFVNILRTPFAQSTPLN 167

Query: 308 RTCYSKNFSMAYALKNQ 358
           R   S+N  M    K++
Sbjct: 168 RNTSSRNTEMPLVRKDK 184


>SPBP8B7.19 |spt16||FACT complex component Spt16|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1019

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 17/59 (28%), Positives = 26/59 (44%), Gaps = 2/59 (3%)
 Frame = +1

Query: 268 VDEFFARCFNEPEQNMLFKKFLD--GVCTEKPTVQCETFKTKSEGELVEIKNPRFPHKN 438
           +  F  R  N    + +FK   D     T++ T + E      + +L+EIKN R  H N
Sbjct: 606 IRSFTFRSSNNSRMSQVFKDIQDMKKAATKRETERKEFADVIEQDKLIEIKNKRPAHIN 664


>SPBC2G2.02 |syj1||inositol-polyphosphate 5-phosphatase
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1076

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 12/48 (25%), Positives = 22/48 (45%)
 Frame = +3

Query: 645  EVAGALINARSIFSIYPVNGITSGKDHSD*MEPSYFHQGIPFQGIPNP 788
            ++AG++    ++    P NG+   K  S      +F  G+P + I  P
Sbjct: 885  DIAGSVAGKPNLIPHLPANGVDKIKQPSSERSKWWFDDGLPAKSIAAP 932


>SPAC10F6.13c |||aspartate aminotransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 409

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 13/32 (40%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
 Frame = +1

Query: 370 ETFKTKSEGELVEIKNPRFP-HKNTQEESGIS 462
           ETF  K  G  V I NP +P H+   E+ G++
Sbjct: 120 ETFYVKHTGAHVYISNPTWPVHRTLWEKLGVT 151


>SPAC2E12.02 |hsf1|hstf, hsf|transcription factor
           Hsf1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 609

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 21/90 (23%), Positives = 41/90 (45%)
 Frame = +2

Query: 98  HPNSLGFIGQAEAHSANSIKYKNNYYGERCHCNISQVLKRSLNVVSIEPYEFGVTVLSMN 277
           +PNSL        ++ +S ++ N+Y G   +   S  L  S N+  ++P ++      M+
Sbjct: 403 YPNSL-----YPVNNTSSEQHHNSYRGSVSNSQPSGNLSESTNLQPVQPVDY------MS 451

Query: 278 SSRVALTNLNRTCYSKNFSMAYALKNQRFN 367
           +S  +  + N      NF   YA+  +R +
Sbjct: 452 NSNPSYGSYNAEDQLTNFHPGYAMDQKRIS 481


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,322,089
Number of Sequences: 5004
Number of extensions: 66296
Number of successful extensions: 183
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 169
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 183
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 396433620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)