Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30585
         (814 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_25663| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.5  
SB_48575| Best HMM Match : CARD (HMM E-Value=5.3e-19)                  29   3.4  
SB_15333| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.9  

>SB_25663| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 264

 Score = 30.7 bits (66), Expect = 1.5
 Identities = 21/48 (43%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
 Frame = +2

Query: 650 GGGFD*CAFYFLNLSSKRNYFGKGPFGLN-GTFVLPPGNSIPRNSKPL 790
           G G D CA Y    S K N+ G   FG +  TFVLPPGN    + +P+
Sbjct: 12  GSGND-CASY---RSDKNNFNGIYIFGEHPATFVLPPGNESGLDERPV 55


>SB_48575| Best HMM Match : CARD (HMM E-Value=5.3e-19)
          Length = 618

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 19/60 (31%), Positives = 30/60 (50%)
 Frame = -1

Query: 742 GSIQSEWSFPEVIPFTG*IEKIERALIKAPATSHYRGKILEQNAPQLEFVDRNDLMLTQL 563
           GS   E SF  ++      +++ + +I    + H R KILE+N  ++E V R  L  T L
Sbjct: 492 GSCSKEDSFKALLKSIYRCDEVNKGIINMVTSQHIRAKILERN--RVEIVQRLQLDRTFL 549


>SB_15333| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 752

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 14/27 (51%), Positives = 16/27 (59%)
 Frame = -1

Query: 637 RGKILEQNAPQLEFVDRNDLMLTQLPR 557
           RGKIL  + PQ   VDRN L L +  R
Sbjct: 227 RGKILSVDPPQKGLVDRNSLALLRFVR 253


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,333,446
Number of Sequences: 59808
Number of extensions: 471236
Number of successful extensions: 1160
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1094
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1160
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2263654701
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)