Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30585
         (814 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U13019-10|AAC24442.1|  757|Caenorhabditis elegans Hypothetical p...    33   0.32 
Z81042-2|CAB02793.1|  458|Caenorhabditis elegans Hypothetical pr...    29   4.0  
U64605-8|AAF98602.1|  472|Caenorhabditis elegans Sorting nexin p...    28   6.9  

>U13019-10|AAC24442.1|  757|Caenorhabditis elegans Hypothetical
           protein T12A2.2 protein.
          Length = 757

 Score = 32.7 bits (71), Expect = 0.32
 Identities = 27/92 (29%), Positives = 47/92 (51%), Gaps = 3/92 (3%)
 Frame = +1

Query: 319 FKKFL-DGVCTEKPTVQCETFKTKSEGELVEIKNPRFPHKNTQEESGISERDKKIIGIVI 495
           F+K+L D    E+ + Q  T K +   +    KN +  + N  +ESG+S   + II I++
Sbjct: 428 FEKYLKDEETKERSSSQSGTTKDEKLYDKAA-KNVKSRNANDGDESGVSSNVRTIISIIL 486

Query: 496 VTCLNAS*LQCS*VSLNVYD--DVVIVSTSNH 585
           V  L    +  + V+ N Y    VV+ S++N+
Sbjct: 487 VIFLLMFVVHATYVTSNAYSHPSVVLQSSTNN 518


>Z81042-2|CAB02793.1|  458|Caenorhabditis elegans Hypothetical
           protein C27H6.2 protein.
          Length = 458

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = +2

Query: 74  VDNEIETIHPNSLGFIGQAEAHSANSI 154
           +D E +  H  + GF+GQA A +A SI
Sbjct: 44  IDTETQEAHYEAAGFVGQAPARTAASI 70


>U64605-8|AAF98602.1|  472|Caenorhabditis elegans Sorting nexin
           protein 1 protein.
          Length = 472

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 10/26 (38%), Positives = 19/26 (73%)
 Frame = +2

Query: 461 ARETKKLLA*LLSHVSMRHNCNVREF 538
           AR+ ++ +  L+ H  MR++C+VR+F
Sbjct: 185 ARQLERYICRLIQHPRMRNDCDVRDF 210


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,343,034
Number of Sequences: 27780
Number of extensions: 376339
Number of successful extensions: 969
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 920
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 969
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1998381620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)