Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30584
(806 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 33 0.063
SPAC1486.09 |||ribosome biogenesis protein Nob1 |Schizosaccharom... 27 3.1
SPAC9G1.02 |wis4|wak1, wik1|MAP kinase kinase kinase Wis4|Schizo... 26 5.5
SPCC825.01 |||ribosome biogenesis ATPase, Arb family |Schizosacc... 26 7.2
SPCC18B5.03 |wee1||dual specificity protein kinase Wee1|Schizosa... 26 7.2
SPAC9E9.11 |plr1|plr|pyridoxal reductase |Schizosaccharomyces po... 26 7.2
SPBC11C11.02 |imp2||contractile ring protein Imp2|Schizosaccharo... 25 9.6
SPBC2G2.02 |syj1||inositol-polyphosphate 5-phosphatase |Schizosa... 25 9.6
SPBC23E6.07c |rfc1||DNA replication factor C complex subunit Rfc... 25 9.6
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 32.7 bits (71), Expect = 0.063
Identities = 31/108 (28%), Positives = 46/108 (42%)
Frame = +1
Query: 199 TEKPAPAPRGPHGVQVVDTAPTIRSPWTRRPSSLCS*KKISETEPWSLYQLPEPSGKESP 378
T P P P G+ V PT ++P PSS + S + P S +P P SP
Sbjct: 1215 TAPPVPTPSA--GLPPVPV-PTAKAPPVPAPSS----EAPSVSTPRS--SVPSPHSNASP 1265
Query: 379 SYWTSS*DICTISTEHVAAGASGSVARRTPSRASAGEGAPRGTHRHTH 522
S +SS + + + + S S A R + S+ + + G H H H
Sbjct: 1266 SPTSSS--MASAAPARTSVSRSKSKAERHETSTSSRKSSKSGEHHHHH 1311
>SPAC1486.09 |||ribosome biogenesis protein Nob1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 388
Score = 27.1 bits (57), Expect = 3.1
Identities = 15/40 (37%), Positives = 19/40 (47%)
Frame = +3
Query: 582 LDTQGAFDSESTVRDCATVFALFQRCCRPFRYTTSRKTFQ 701
LDT G S + +R+ A F R R TSRK F+
Sbjct: 10 LDTGGIICSSTLLRNSAESFYTIPRVIAEIRDETSRKNFE 49
>SPAC9G1.02 |wis4|wak1, wik1|MAP kinase kinase kinase
Wis4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1401
Score = 26.2 bits (55), Expect = 5.5
Identities = 11/20 (55%), Positives = 15/20 (75%)
Frame = +3
Query: 261 DHTFTLDEEALKSLLLKEDI 320
DHT + + EALK+LL +DI
Sbjct: 701 DHTLSENPEALKALLFSKDI 720
>SPCC825.01 |||ribosome biogenesis ATPase, Arb family
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 822
Score = 25.8 bits (54), Expect = 7.2
Identities = 16/42 (38%), Positives = 21/42 (50%)
Frame = -2
Query: 388 SNKKDFPFLKAPATDITTTALSLISSFRSRDLRASSSRVNVW 263
S +K P PA IT T +L+S SRDL+ V+ W
Sbjct: 246 SGQKVAPDGSNPADGITVTG-NLLSPPNSRDLQVEKLSVSAW 286
>SPCC18B5.03 |wee1||dual specificity protein kinase
Wee1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 877
Score = 25.8 bits (54), Expect = 7.2
Identities = 16/56 (28%), Positives = 24/56 (42%), Gaps = 4/56 (7%)
Frame = -2
Query: 226 HAVPAPASLSL----SRTSSRIPRSFSRSLMPNEPVKARG*PCAPFLAAQDHDPRS 71
H P+P+ + S+ + RSF S M N + +PFL + H P S
Sbjct: 137 HTAPSPSDVRAFPIHKNASTGVKRSFFSSSMSNGAMSPPSHSPSPFLQSSQHIPPS 192
>SPAC9E9.11 |plr1|plr|pyridoxal reductase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 333
Score = 25.8 bits (54), Expect = 7.2
Identities = 12/33 (36%), Positives = 21/33 (63%)
Frame = -2
Query: 220 VPAPASLSLSRTSSRIPRSFSRSLMPNEPVKAR 122
+P P S S+SRT S + + ++SL P + +A+
Sbjct: 279 IPIPGSTSVSRTKSNL-NALNKSLSPEQFKEAK 310
>SPBC11C11.02 |imp2||contractile ring protein
Imp2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 670
Score = 25.4 bits (53), Expect = 9.6
Identities = 19/48 (39%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Frame = -2
Query: 217 PAPASLSLSRTSSRIPRSFS-RSLMPNEPVKARG*PCAPFLAAQDHDP 77
P S SLS+ +SR+PRS + +L PN R P A A D +P
Sbjct: 512 PKRPSSSLSQNASRLPRSLTPGNLEPNYDFGVRVDP-ASGTAPTDDEP 558
>SPBC2G2.02 |syj1||inositol-polyphosphate 5-phosphatase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1076
Score = 25.4 bits (53), Expect = 9.6
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = -2
Query: 217 PAPASLSLSRTSSRIPRSFSRSLMPNEPVK 128
PAP+SL+ S SS+ + + PN+P K
Sbjct: 979 PAPSSLARSSVSSQRSSTSIIPIKPNKPTK 1008
>SPBC23E6.07c |rfc1||DNA replication factor C complex subunit
Rfc1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 934
Score = 25.4 bits (53), Expect = 9.6
Identities = 14/41 (34%), Positives = 24/41 (58%)
Frame = +1
Query: 175 SEKTFDSVTEKPAPAPRGPHGVQVVDTAPTIRSPWTRRPSS 297
+ + FDS+TE PA G ++ + TA +S +TR+ +S
Sbjct: 805 NREDFDSITELVLPADAGEKLMKTIPTA--AKSAFTRKYNS 843
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,331,086
Number of Sequences: 5004
Number of extensions: 68788
Number of successful extensions: 223
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 213
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 223
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 392429240
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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