Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30584
(806 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_01_0302 - 2021221-2023305 35 0.066
01_06_0024 + 25690428-25690637,25694488-25694549,25694667-256947... 31 0.82
03_01_0050 + 430744-431337,432131-432249,432539-433084,433177-43... 31 1.1
04_03_0925 - 20856628-20856690,20856786-20856845,20856924-208570... 31 1.4
03_01_0273 - 2107778-2108772,2108857-2109043,2109121-2110575,211... 31 1.4
11_01_0231 - 1791754-1791947,1792178-1792253,1792352-1792483,179... 30 1.9
03_02_0052 + 5285061-5285106,5285711-5285754,5286317-5286539,528... 30 2.5
02_05_0460 - 29224525-29224620,29225525-29226625 30 2.5
12_01_0228 - 1726856-1727049,1727280-1727355,1727454-1727585,172... 29 3.3
07_03_1107 - 24024387-24024497,24025799-24026410 29 3.3
02_01_0246 + 1617326-1617367,1618903-1624419,1625040-1625498,162... 29 3.3
05_07_0116 - 27785083-27786123,27786201-27786278,27786364-277869... 29 4.4
03_01_0470 + 3619417-3619572,3619681-3619759,3620017-3620258,362... 29 4.4
01_06_1842 - 40278875-40280131 29 4.4
07_01_0684 - 5161218-5161427,5161509-5161616,5162217-5162390,516... 29 5.8
02_04_0653 - 24747959-24748276,24748847-24748959,24749815-247500... 29 5.8
01_06_0661 - 30977760-30977783,30977944-30978014,30978045-30979464 29 5.8
07_01_0584 + 4345134-4345237,4346165-4346267,4346397-4346466,434... 28 7.6
06_03_0178 + 17594062-17595576 28 7.6
02_01_0639 + 4791454-4792106,4792207-4792369,4792618-4793238 28 7.6
>02_01_0302 - 2021221-2023305
Length = 694
Score = 35.1 bits (77), Expect = 0.066
Identities = 36/104 (34%), Positives = 43/104 (41%), Gaps = 2/104 (1%)
Frame = +1
Query: 193 SVTEKPAPAP-RGPHGVQV-VDTAPTIRSPWTRRPSSLCS*KKISETEPWSLYQLPEPSG 366
S T P +P RG G V + P R P+ + PSS + S P S Y P P G
Sbjct: 384 SYTPTPGGSPGRGGQGPPAPVSSPPRRRGPYPQPPSSSPT---PSYPSPSSSY--PAPPG 438
Query: 367 KESPSYWTSS*DICTISTEHVAAGASGSVARRTPSRASAGEGAP 498
+PSY S T + H G S S TPS S G P
Sbjct: 439 SNTPSY-PSPPSSATTPSSHSPPGGSSST---TPSYPSPNGGKP 478
>01_06_0024 +
25690428-25690637,25694488-25694549,25694667-25694715,
25697066-25697182,25697305-25697358,25697813-25697898,
25698058-25698163,25698354-25698488
Length = 272
Score = 31.5 bits (68), Expect = 0.82
Identities = 22/49 (44%), Positives = 27/49 (55%)
Frame = -2
Query: 232 AAHAVPAPASLSLSRTSSRIPRSFSRSLMPNEPVKARG*PCAPFLAAQD 86
A+ A P+P+S S S SS +P F L+ N PV A P AP AA D
Sbjct: 28 ASLASPSPSSSSSSSNSSNLPAPFRPRLIRNTPVFAA--PVAP--AAMD 72
>03_01_0050 +
430744-431337,432131-432249,432539-433084,433177-433483,
433605-433773,433861-433960,435805-436103,436796-436869,
437007-437442,437622-437650
Length = 890
Score = 31.1 bits (67), Expect = 1.1
Identities = 30/102 (29%), Positives = 44/102 (43%), Gaps = 3/102 (2%)
Frame = +3
Query: 84 WSWAARNGAHGQPRALTGSLGIKLRENDRGIREDVRLSDREAGAGTAWAAR-CPGR-RHG 257
W+ ++R G LG R+ R +RE VR++ + G G A R GR RHG
Sbjct: 105 WTASSRTSPRGGGAGGEELLGETERQRVRAVRERVRMASQGQGHGGAHTPRLMRGRGRHG 164
Query: 258 PDHTFTLDEEALKSLLLKEDIRD-RAVVVISVAGAFRKGKSF 380
D + E + L D R A + +F +G+SF
Sbjct: 165 QDVVTRMAMERQRELQGLSDHRAVSAFAHRARIQSFLRGRSF 206
>04_03_0925 -
20856628-20856690,20856786-20856845,20856924-20857001,
20857127-20857192,20857542-20858675,20858991-20860283
Length = 897
Score = 30.7 bits (66), Expect = 1.4
Identities = 29/95 (30%), Positives = 38/95 (40%), Gaps = 5/95 (5%)
Frame = +1
Query: 199 TEKPAPAPRGP--HGVQVVDTA---PTIRSPWTRRPSSLCS*KKISETEPWSLYQLPEPS 363
T PAPAP P H + A P P T P+ S S + + P PS
Sbjct: 15 TPAPAPAPASPPPHPAASGNEAAAPPKPNPPITPAPARNASAAPPSGSPATAAAAAPVPS 74
Query: 364 GKESPSYWTSS*DICTISTEHVAAGASGSVARRTP 468
KES S ++ T VAA +G + R+ P
Sbjct: 75 RKESGSTSAAAPAAATRKASGVAAATTGVLPRKPP 109
>03_01_0273 -
2107778-2108772,2108857-2109043,2109121-2110575,
2110670-2111251
Length = 1072
Score = 30.7 bits (66), Expect = 1.4
Identities = 24/63 (38%), Positives = 29/63 (46%)
Frame = -1
Query: 275 GERMVGAVSTTWTPCGPRGAGAGFSVTESNVFSDPPVILTKFDA**TSQSSRLTVRSVPG 96
GE G VS T GPRG G G SV S V + + T++ S + S PG
Sbjct: 81 GESGGGDVSPT-IGAGPRG-GTGMSVVNSRVKRALGLKARRSSQPTTARVSSMNASSAPG 138
Query: 95 SPG 87
SPG
Sbjct: 139 SPG 141
>11_01_0231 -
1791754-1791947,1792178-1792253,1792352-1792483,
1792563-1792673,1792790-1792840,1793012-1793122
Length = 224
Score = 30.3 bits (65), Expect = 1.9
Identities = 14/35 (40%), Positives = 18/35 (51%)
Frame = +2
Query: 611 IHGARLRDRVRSVPTMLSSVQIYNLSQNIPGGRPS 715
+HG + D VRS P + + SQ IPGG S
Sbjct: 106 LHGLKFEDAVRSKPDAYKAFSSEDRSQEIPGGGES 140
>03_02_0052 +
5285061-5285106,5285711-5285754,5286317-5286539,
5286664-5286827,5286918-5288144
Length = 567
Score = 29.9 bits (64), Expect = 2.5
Identities = 20/69 (28%), Positives = 36/69 (52%), Gaps = 3/69 (4%)
Frame = -2
Query: 805 KPAWKREFRAPPFLEAASRTRNSVNNCKVAGRSSSWNVLREVVYLN--GRQHRWNRANT- 635
+P W + P L AASR SV + AG+ +W+V+ E ++ + R+ W+ +
Sbjct: 300 QPRWVQGLPYPQLLAAASRRIRSV-VARYAGKLIAWDVVNENLHFSFFERRFGWDASTAF 358
Query: 634 VAQSRTVDS 608
A +R +D+
Sbjct: 359 YAAARMLDT 367
>02_05_0460 - 29224525-29224620,29225525-29226625
Length = 398
Score = 29.9 bits (64), Expect = 2.5
Identities = 23/59 (38%), Positives = 26/59 (44%), Gaps = 2/59 (3%)
Frame = -2
Query: 253 CRRPGHRAAHAVPAPASLSLSRTSSRIPRSFSR-SLMPN-EPVKARG*PCAPFLAAQDH 83
C R HR AV APASLSL S+ + SL P+ P A P L A H
Sbjct: 203 CHRSFHRREPAVVAPASLSLCPASASASAAAGLVSLSPSATPTGANSSRLMPLLLAPPH 261
>12_01_0228 -
1726856-1727049,1727280-1727355,1727454-1727585,
1727665-1727775,1727892-1727942,1728114-1728275,
1729558-1729584
Length = 250
Score = 29.5 bits (63), Expect = 3.3
Identities = 14/35 (40%), Positives = 18/35 (51%)
Frame = +2
Query: 611 IHGARLRDRVRSVPTMLSSVQIYNLSQNIPGGRPS 715
+HG + D VRS P + + SQ IPGG S
Sbjct: 132 LHGLKFDDAVRSKPDAYKAFSSEDRSQEIPGGGES 166
>07_03_1107 - 24024387-24024497,24025799-24026410
Length = 240
Score = 29.5 bits (63), Expect = 3.3
Identities = 17/61 (27%), Positives = 27/61 (44%)
Frame = +1
Query: 199 TEKPAPAPRGPHGVQVVDTAPTIRSPWTRRPSSLCS*KKISETEPWSLYQLPEPSGKESP 378
T+ PAPAP+ ++P + +P PS T+P + P P+ K+ P
Sbjct: 92 TKAPAPAPKAAKATPPPASSPPVEAPVASPPSPAAEAPATIPTKPDA--PAPAPAKKKKP 149
Query: 379 S 381
S
Sbjct: 150 S 150
>02_01_0246 + 1617326-1617367,1618903-1624419,1625040-1625498,
1625603-1625887,1626016-1626030,1626339-1626419,
1626909-1627322,1627423-1627719,1627801-1629864
Length = 3057
Score = 29.5 bits (63), Expect = 3.3
Identities = 21/54 (38%), Positives = 29/54 (53%)
Frame = +1
Query: 157 VRMTGGSEKTFDSVTEKPAPAPRGPHGVQVVDTAPTIRSPWTRRPSSLCS*KKI 318
V MT SE+ D TE P P P ++ DTAPT+ P T + S + S ++I
Sbjct: 1189 VEMTESSEQMKD--TEPPVPEPESSEEMR--DTAPTVPEP-TLQDSRVASVEEI 1237
>05_07_0116 -
27785083-27786123,27786201-27786278,27786364-27786976,
27787128-27787213,27787316-27787438,27787600-27787734,
27787930-27788019,27788796-27788981,27789560-27789661,
27789787-27789900,27790010-27790153,27790260-27790325,
27790895-27791056,27791668-27791916
Length = 1062
Score = 29.1 bits (62), Expect = 4.4
Identities = 18/43 (41%), Positives = 26/43 (60%)
Frame = +3
Query: 270 FTLDEEALKSLLLKEDIRDRAVVVISVAGAFRKGKSFLLDFFL 398
F +D EA+ +L L + V V+SV G R+GKSF+L+ L
Sbjct: 47 FVMDPEAVAALQLVKG----PVGVVSVCGRARQGKSFVLNQLL 85
>03_01_0470 +
3619417-3619572,3619681-3619759,3620017-3620258,
3620804-3621148,3623592-3624116
Length = 448
Score = 29.1 bits (62), Expect = 4.4
Identities = 20/49 (40%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
Frame = +1
Query: 373 SPSYWTSS*DICTISTEHVAAGASGSVA-RRTP-SRASAGEGAPRGTHR 513
+PS W ++ +HVAAG+ G VA RRTP A A G R R
Sbjct: 226 APSMWIVE---MAVAGQHVAAGSDGRVAWRRTPWVGAHAARGGSRPLRR 271
>01_06_1842 - 40278875-40280131
Length = 418
Score = 29.1 bits (62), Expect = 4.4
Identities = 25/85 (29%), Positives = 32/85 (37%), Gaps = 2/85 (2%)
Frame = -2
Query: 274 VNVWS-GPCRRPGHRAAHAVPAPASLSLSRTSSRIPRSFSRSLMPNEPVKARG*PCAPFL 98
+N+W R GH AA A A A +LSR S + + + N A AP
Sbjct: 170 INIWPFSRSRSAGHSAAGAGTAAAGAALSRNKSNPNANVNANASNNAAAAAAAAATAPAA 229
Query: 97 A-AQDHDPRSNYKKNPISMSQMQHE 26
A A P P S S + E
Sbjct: 230 ATAPGPAPARKVSSAPCSRSNSRGE 254
>07_01_0684 -
5161218-5161427,5161509-5161616,5162217-5162390,
5162515-5162643,5162722-5163009,5163114-5163346,
5164235-5165060
Length = 655
Score = 28.7 bits (61), Expect = 5.8
Identities = 30/94 (31%), Positives = 39/94 (41%), Gaps = 3/94 (3%)
Frame = -2
Query: 355 PATDITTTALSLISSFRSRDLRASSSRVNVWSGPCRRPGHRAAHAVPAPASLSLSRTSSR 176
P++D A R R+L ASSS S RRP A PAPAS + + +
Sbjct: 37 PSSDAAAGAAMPTHRPRRRELEASSSSSAFASPVLRRP---ATAVSPAPAS-AAAAAAGA 92
Query: 175 IPRSFSRSLMPNEPVKAR---G*PCAPFLAAQDH 83
+P S L+P A G F AA+ H
Sbjct: 93 LPIFSSLLLLPRPNATATPFDGTAAEAFAAARPH 126
>02_04_0653 -
24747959-24748276,24748847-24748959,24749815-24750015,
24750097-24750267,24750354-24750425,24751515-24751543,
24752161-24752303
Length = 348
Score = 28.7 bits (61), Expect = 5.8
Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 4/48 (8%)
Frame = +3
Query: 231 ARCPGR---RHGPDHTFTLDEEALKSLLLK-EDIRDRAVVVISVAGAF 362
++ PGR H PDH LD AL + L++ + I + I + GAF
Sbjct: 274 SKLPGRFNQHHTPDHRMELDHSALFNRLMRLQGIHEEGPGEIIIEGAF 321
>01_06_0661 - 30977760-30977783,30977944-30978014,30978045-30979464
Length = 504
Score = 28.7 bits (61), Expect = 5.8
Identities = 17/41 (41%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
Frame = -2
Query: 778 APPFLEAASRTRNSVNNCKV-AGRSSSWNVLREVVYLNGRQ 659
A P+L AASR + + AGRSSSW E + G Q
Sbjct: 92 ALPWLAAASRDGGAAPAARASAGRSSSWETSAEKFFSRGDQ 132
>07_01_0584 +
4345134-4345237,4346165-4346267,4346397-4346466,
4346552-4346590,4346684-4346801,4346894-4346951,
4347031-4347095,4347281-4347341,4347678-4347779,
4348005-4348070,4348399-4348443,4348540-4348797,
4349289-4349501,4350103-4350411,4350461-4350613
Length = 587
Score = 28.3 bits (60), Expect = 7.6
Identities = 17/47 (36%), Positives = 25/47 (53%)
Frame = +3
Query: 258 PDHTFTLDEEALKSLLLKEDIRDRAVVVISVAGAFRKGKSFLLDFFL 398
PDH T A + L + I + + ++V G +R GKSFLL+ L
Sbjct: 41 PDHGHTKLRLAKEGLEAIKRI-ETPIAAVAVIGPYRSGKSFLLNQLL 86
>06_03_0178 + 17594062-17595576
Length = 504
Score = 28.3 bits (60), Expect = 7.6
Identities = 16/33 (48%), Positives = 17/33 (51%)
Frame = -2
Query: 250 RRPGHRAAHAVPAPASLSLSRTSSRIPRSFSRS 152
R PGH H P+PA S R SS P S S S
Sbjct: 3 RSPGHSPRHLSPSPAP-STPRPSSPTPSSASAS 34
>02_01_0639 + 4791454-4792106,4792207-4792369,4792618-4793238
Length = 478
Score = 28.3 bits (60), Expect = 7.6
Identities = 14/49 (28%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Frame = +3
Query: 24 PSCCICDIEIGFFL*LLRGSWSWAARNGAHGQPRALTGSLGIKL-REND 167
P + + I F L +L ++W NGA + +T +G+ + R+ND
Sbjct: 417 PGLALAQVSIEFILTMLLYHFNWELPNGAAPEELDMTEDMGLTIRRKND 465
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,357,446
Number of Sequences: 37544
Number of extensions: 565330
Number of successful extensions: 2363
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 2247
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2362
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2197677108
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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