Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30584
         (806 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_37041| Best HMM Match : GBP (HMM E-Value=0)                         76   3e-14
SB_11644| Best HMM Match : Pox_A32 (HMM E-Value=0.026)                 26   1.3  
SB_36132| Best HMM Match : GBP (HMM E-Value=8.7e-28)                   31   1.5  
SB_7044| Best HMM Match : PAN (HMM E-Value=1.3e-07)                    30   1.9  
SB_34511| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.9  
SB_26918| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.5  
SB_52258| Best HMM Match : PAN (HMM E-Value=4.5e-09)                   30   2.5  
SB_35470| Best HMM Match : PAN (HMM E-Value=2.9e-08)                   30   2.5  
SB_28606| Best HMM Match : PAN (HMM E-Value=4.6e-10)                   30   2.5  
SB_9820| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   2.5  
SB_42767| Best HMM Match : Thyroglobulin_1 (HMM E-Value=0)             29   3.4  
SB_47639| Best HMM Match : Pox_A32 (HMM E-Value=0.075)                 25   3.8  
SB_9614| Best HMM Match : GBP (HMM E-Value=1e-31)                      29   4.4  
SB_3169| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   4.4  
SB_17447| Best HMM Match : zf-B_box (HMM E-Value=0.04)                 29   5.9  
SB_1163| Best HMM Match : DMA (HMM E-Value=1.4e-11)                    29   5.9  
SB_34187| Best HMM Match : ABC_tran (HMM E-Value=1.49995e-41)          28   7.7  
SB_17147| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.7  
SB_6602| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   7.7  

>SB_37041| Best HMM Match : GBP (HMM E-Value=0)
          Length = 466

 Score = 76.2 bits (179), Expect = 3e-14
 Identities = 40/102 (39%), Positives = 52/102 (50%)
 Frame = +3

Query: 441 EWLGSEEDPLQGFSWRGGSERDTPAYSCGLXXXXXXXXXXXXXXXXCLDTQGAFDSESTV 620
           +WLG E + L+GFSWRGGSERDT                        +DTQGAFDS STV
Sbjct: 5   DWLGGETEALEGFSWRGGSERDTTGILMWNKPYICKRPDGEEVVVLLMDTQGAFDSSSTV 64

Query: 621 RDCATVFALFQRCCRPFRYTTSRKTFQEDDLPATLQLFTELR 746
           +DCAT+FAL         +T   K   E++     Q+  E++
Sbjct: 65  KDCATIFALSTMTSSTQLFTEYGKLAMENNEIKPFQVNNEIK 106


>SB_11644| Best HMM Match : Pox_A32 (HMM E-Value=0.026)
          Length = 1532

 Score = 26.2 bits (55), Expect(2) = 1.3
 Identities = 14/43 (32%), Positives = 20/43 (46%)
 Frame = -2

Query: 370 PFLKAPATDITTTALSLISSFRSRDLRASSSRVNVWSGPCRRP 242
           P   AP+  +  T+L   S+F+ R    S   V+ WS P   P
Sbjct: 749 PRQSAPSRSMAITSLLCGSTFKRRTTAPSMGLVSDWSIPATSP 791



 Score = 23.0 bits (47), Expect(2) = 1.3
 Identities = 10/28 (35%), Positives = 14/28 (50%)
 Frame = -2

Query: 550 ERRFEYLRPHEYAGVSLSEPPRQLKPWR 467
           E +  ++RP    G +   PPRQ  P R
Sbjct: 729 EAKRRFVRPSRGGGTAERPPPRQSAPSR 756


>SB_36132| Best HMM Match : GBP (HMM E-Value=8.7e-28)
          Length = 368

 Score = 30.7 bits (66), Expect = 1.5
 Identities = 22/65 (33%), Positives = 31/65 (47%)
 Frame = +2

Query: 512 GILMWSEIFKATLDDGEKVAIILFRHARRL*Q*IHGARLRDRVRSVPTMLSSVQIYNLSQ 691
           GI MW +  K  L DG++VA++ F                 +V +V T+LSS  IYN  +
Sbjct: 157 GIWMWGKPLKIKLQDGQEVALV-FLDTEGFAATNVSESYDAKVFAVATLLSSYLIYNSVK 215

Query: 692 NIPGG 706
            I  G
Sbjct: 216 IIDQG 220


>SB_7044| Best HMM Match : PAN (HMM E-Value=1.3e-07)
          Length = 564

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 14/33 (42%), Positives = 18/33 (54%)
 Frame = +3

Query: 597 AFDSESTVRDCATVFALFQRCCRPFRYTTSRKT 695
           A + + TV DC T F +  R C+   Y TS KT
Sbjct: 499 AIEQDVTVGDCVT-FCMLDRRCQSLNYITSSKT 530


>SB_34511| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2492

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 19/50 (38%), Positives = 24/50 (48%)
 Frame = -2

Query: 268  VWSGPCRRPGHRAAHAVPAPASLSLSRTSSRIPRSFSRSLMPNEPVKARG 119
            VW+   RRPG + A+    P S  LS  SS  P   S++ MP    K  G
Sbjct: 1886 VWTEEVRRPGSKGAYRAQTPRSTILS--SSAAPIFGSQAWMPLFGAKTAG 1933


>SB_26918| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 174

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = +3

Query: 597 AFDSESTVRDCATVFALFQRCCRPFRYTTSRKT 695
           A + + TV DC  +F +  R C+   Y TS KT
Sbjct: 109 AIEQDVTVEDC-VMFCMLDRRCQSLNYVTSSKT 140


>SB_52258| Best HMM Match : PAN (HMM E-Value=4.5e-09)
          Length = 97

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = +3

Query: 597 AFDSESTVRDCATVFALFQRCCRPFRYTTSRKT 695
           A + + TV DC  +F +  R C+   Y TS KT
Sbjct: 32  AIEQDVTVEDC-VMFCMLDRRCQSLNYVTSSKT 63


>SB_35470| Best HMM Match : PAN (HMM E-Value=2.9e-08)
          Length = 614

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = +3

Query: 597 AFDSESTVRDCATVFALFQRCCRPFRYTTSRKT 695
           A + + TV DC  +F +  R C+   Y TS KT
Sbjct: 549 AIEQDVTVEDC-VMFCMLDRRCQSLNYVTSSKT 580


>SB_28606| Best HMM Match : PAN (HMM E-Value=4.6e-10)
          Length = 463

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = +3

Query: 597 AFDSESTVRDCATVFALFQRCCRPFRYTTSRKT 695
           A + + TV DC  +F +  R C+   Y TS KT
Sbjct: 398 AIEQDVTVEDC-VMFCMLDRRCQSLNYVTSSKT 429


>SB_9820| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1060

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = +3

Query: 597  AFDSESTVRDCATVFALFQRCCRPFRYTTSRKT 695
            A + + TV DC  +F +  R C+   Y TS KT
Sbjct: 995  AIEQDVTVEDC-VMFCMLDRRCQSLNYVTSSKT 1026


>SB_42767| Best HMM Match : Thyroglobulin_1 (HMM E-Value=0)
          Length = 6725

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 14/36 (38%), Positives = 16/36 (44%)
 Frame = -1

Query: 281  VQGERMVGAVSTTWTPCGPRGAGAGFSVTESNVFSD 174
            + G  + G   T W  C P  A     V ES VFSD
Sbjct: 3395 ISGRELAGTRRTGWPNCPPHRAADVAIVIESGVFSD 3430


>SB_47639| Best HMM Match : Pox_A32 (HMM E-Value=0.075)
          Length = 911

 Score = 25.0 bits (52), Expect(2) = 3.8
 Identities = 14/43 (32%), Positives = 19/43 (44%)
 Frame = -2

Query: 370 PFLKAPATDITTTALSLISSFRSRDLRASSSRVNVWSGPCRRP 242
           P   AP+  +  T+L   S+F  R    S   V+ WS P   P
Sbjct: 110 PRQSAPSRSMAITSLLCGSTFERRTTAPSMGVVSDWSIPATSP 152



 Score = 22.6 bits (46), Expect(2) = 3.8
 Identities = 10/28 (35%), Positives = 14/28 (50%)
 Frame = -2

Query: 550 ERRFEYLRPHEYAGVSLSEPPRQLKPWR 467
           E +  ++RP    G +   PPRQ  P R
Sbjct: 90  EAKRRFVRPSPGGGTAERPPPRQSAPSR 117


>SB_9614| Best HMM Match : GBP (HMM E-Value=1e-31)
          Length = 708

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 14/31 (45%), Positives = 22/31 (70%)
 Frame = +3

Query: 294 KSLLLKEDIRDRAVVVISVAGAFRKGKSFLL 386
           ++L L  DI+   V V+S+AG  RKGKS+++
Sbjct: 38  RALKLLRDIKG-PVCVVSIAGPCRKGKSYII 67


>SB_3169| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1096

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 13/51 (25%), Positives = 27/51 (52%)
 Frame = -2

Query: 700 WNVLREVVYLNGRQHRWNRANTVAQSRTVDSLSKAPCVSKQYYRYLFTIIE 548
           W+V+ +++  NG+ H  +R + VA S   DS  +   +++  Y   F  ++
Sbjct: 361 WSVVGDLLDGNGQPHTESRQSNVASSGEADSFLRVTHLTRTRYEDKFVFVK 411


>SB_17447| Best HMM Match : zf-B_box (HMM E-Value=0.04)
          Length = 1223

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 25/88 (28%), Positives = 37/88 (42%)
 Frame = -1

Query: 296 LEGLLVQGERMVGAVSTTWTPCGPRGAGAGFSVTESNVFSDPPVILTKFDA**TSQSSRL 117
           ++ +L +G++    VST  TP   +   +GF VT S       V    F    T  ++  
Sbjct: 727 IQKMLDKGDQAHRTVSTMATPVAGQRTQSGFRVTGSTT----EVCARPFPT-TTKAATPA 781

Query: 116 TVRSVPGSPGPRSTQQL*KEPNFNVTNA 33
              SV GSPG   T    + P F+   A
Sbjct: 782 IPSSVKGSPGRAMTTSFGRTPEFSQVRA 809


>SB_1163| Best HMM Match : DMA (HMM E-Value=1.4e-11)
          Length = 403

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 23/61 (37%), Positives = 29/61 (47%), Gaps = 3/61 (4%)
 Frame = -2

Query: 292 RASSSRVNVWSGPCRRPGHRAAHAVPA-PASLSLSRTSS--RIPRSFSRSLMPNEPVKAR 122
           RAS+  V V   P  RP     H+ PA PA     R S+  R P + +R+  P E V  R
Sbjct: 156 RASTPEVRVKEEPVDRPASPQQHSAPASPAREEKERKSTPVREPLNLTRN-FPFENVPPR 214

Query: 121 G 119
           G
Sbjct: 215 G 215


>SB_34187| Best HMM Match : ABC_tran (HMM E-Value=1.49995e-41)
          Length = 1515

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
 Frame = -3

Query: 687 ERLYI*TDDSIVGTE--RTRSRSLAPWIHCQRRLACLNNI 574
           ER  + T+D  +GT+  R R RSL  WI   +     NN+
Sbjct: 486 ERFLVTTNDKPIGTQTPRFRKRSLTRWISPNKTCTLHNNL 525


>SB_17147| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 487

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 18/64 (28%), Positives = 32/64 (50%)
 Frame = +3

Query: 156 RENDRGIREDVRLSDREAGAGTAWAARCPGRRHGPDHTFTLDEEALKSLLLKEDIRDRAV 335
           +++  G  EDV+ SD EAG      A+  G   G   T   +++  KSL   +D R+ + 
Sbjct: 24  KDDKAGKGEDVKASDEEAGEEEDVEAKDNG-EDGASDTIVKEKKPCKSLSDLQDDRENSG 82

Query: 336 VVIS 347
            +++
Sbjct: 83  TILT 86


>SB_6602| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 863

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = +3

Query: 597 AFDSESTVRDCATVFALFQRCCRPFRYTTSRKT 695
           A + + TV DC  +F +  R C+   Y TS +T
Sbjct: 798 AIEQDVTVEDC-VMFCMLDRRCQSLNYNTSSQT 829


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,648,442
Number of Sequences: 59808
Number of extensions: 610020
Number of successful extensions: 1805
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 1651
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1801
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2239700683
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)