Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30584
         (806 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly pro...    23   4.4  
DQ855485-1|ABH88172.1|  128|Apis mellifera chemosensory protein ...    22   5.8  
AJ973400-1|CAJ01447.1|  128|Apis mellifera hypothetical protein ...    22   5.8  
AY569703-1|AAS86656.1|  396|Apis mellifera complementary sex det...    22   7.7  
AY569701-1|AAS86654.1|  407|Apis mellifera complementary sex det...    22   7.7  
AY569700-1|AAS86653.1|  407|Apis mellifera complementary sex det...    22   7.7  
AY569699-1|AAS86652.1|  396|Apis mellifera complementary sex det...    22   7.7  

>AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly
           protein MRJP2 protein.
          Length = 452

 Score = 22.6 bits (46), Expect = 4.4
 Identities = 12/41 (29%), Positives = 18/41 (43%)
 Frame = +1

Query: 151 NFVRMTGGSEKTFDSVTEKPAPAPRGPHGVQVVDTAPTIRS 273
           +F    G        VT     +P   HG+  V+TAP ++S
Sbjct: 244 SFTLKNGICGMALSPVTNNLYYSPLASHGLYYVNTAPFMKS 284


>DQ855485-1|ABH88172.1|  128|Apis mellifera chemosensory protein 4
          protein.
          Length = 128

 Score = 22.2 bits (45), Expect = 5.8
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = +1

Query: 52 LGSFYNCCVDRGPGLP 99
          L ++ NC +D+GP  P
Sbjct: 43 LNAYVNCLLDQGPCTP 58


>AJ973400-1|CAJ01447.1|  128|Apis mellifera hypothetical protein
          protein.
          Length = 128

 Score = 22.2 bits (45), Expect = 5.8
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = +1

Query: 52 LGSFYNCCVDRGPGLP 99
          L ++ NC +D+GP  P
Sbjct: 43 LNAYVNCLLDQGPCTP 58


>AY569703-1|AAS86656.1|  396|Apis mellifera complementary sex
           determiner protein.
          Length = 396

 Score = 21.8 bits (44), Expect = 7.7
 Identities = 10/14 (71%), Positives = 10/14 (71%)
 Frame = +1

Query: 355 EPSGKESPSYWTSS 396
           E SGKES  Y TSS
Sbjct: 190 EKSGKESKKYATSS 203


>AY569701-1|AAS86654.1|  407|Apis mellifera complementary sex
           determiner protein.
          Length = 407

 Score = 21.8 bits (44), Expect = 7.7
 Identities = 10/14 (71%), Positives = 10/14 (71%)
 Frame = +1

Query: 355 EPSGKESPSYWTSS 396
           E SGKES  Y TSS
Sbjct: 201 EKSGKESKKYATSS 214


>AY569700-1|AAS86653.1|  407|Apis mellifera complementary sex
           determiner protein.
          Length = 407

 Score = 21.8 bits (44), Expect = 7.7
 Identities = 10/14 (71%), Positives = 10/14 (71%)
 Frame = +1

Query: 355 EPSGKESPSYWTSS 396
           E SGKES  Y TSS
Sbjct: 201 EKSGKESKKYATSS 214


>AY569699-1|AAS86652.1|  396|Apis mellifera complementary sex
           determiner protein.
          Length = 396

 Score = 21.8 bits (44), Expect = 7.7
 Identities = 10/14 (71%), Positives = 10/14 (71%)
 Frame = +1

Query: 355 EPSGKESPSYWTSS 396
           E SGKES  Y TSS
Sbjct: 190 EKSGKESKKYATSS 203


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 233,374
Number of Sequences: 438
Number of extensions: 5522
Number of successful extensions: 12
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25610547
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)