Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30582
         (730 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY739659-1|AAU85298.1|  288|Apis mellifera hyperpolarization-act...    25   0.55 
DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    25   0.73 
Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    22   5.2  
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    22   5.2  
DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly pro...    22   5.2  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             22   5.2  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    21   9.0  

>AY739659-1|AAU85298.1|  288|Apis mellifera
           hyperpolarization-activated ion channelvariant T
           protein.
          Length = 288

 Score = 25.4 bits (53), Expect = 0.55
 Identities = 23/59 (38%), Positives = 28/59 (47%), Gaps = 3/59 (5%)
 Frame = -2

Query: 654 LSTLRLLH-PRLQR--SPCRLLRNPSRGQPGPHGLRRTLPPPYPHRRTSARNTLGVHEV 487
           LS +RLL   RL R  S    +  P   QP  H  RR  PP  P R +  + T+G  EV
Sbjct: 214 LSLVRLLRLSRLVRYVSQWEEVYIPLYQQPERHYERRATPP-QPDRTSKDQGTIGESEV 271


>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 25.0 bits (52), Expect = 0.73
 Identities = 12/35 (34%), Positives = 16/35 (45%)
 Frame = -1

Query: 283 HPWVRRHHGTHTASHVLAMTGVAFHHLVGGLEACV 179
           H W+RR+       H    TG    H+VGGL   +
Sbjct: 181 HGWMRRNVLNKQHVHFHDYTGSVVIHVVGGLTGLI 215


>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = +1

Query: 433 LSNTTAIAEAWARLDHKFD 489
           L+NT  +   W  LD+ FD
Sbjct: 32  LTNTLNVIHKWKYLDYDFD 50


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = +3

Query: 345 NRFQGRYQLPA 377
           NRF G Y++PA
Sbjct: 435 NRFSGEYEIPA 445


>DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly
           protein 9 protein.
          Length = 423

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = +3

Query: 306 QNQAYYPIRRLVSNRFQGRYQ 368
           Q +A+Y +R   +N FQ +YQ
Sbjct: 17  QAKAHYSLRDFKANIFQVKYQ 37


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 9/23 (39%), Positives = 11/23 (47%)
 Frame = -1

Query: 274 VRRHHGTHTASHVLAMTGVAFHH 206
           ++RHH      H L  T V  HH
Sbjct: 138 LQRHHHLQNHHHHLQSTAVQDHH 160


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 14/31 (45%), Positives = 15/31 (48%)
 Frame = -2

Query: 579 QPGPHGLRRTLPPPYPHRRTSARNTLGVHEV 487
           QPG HG     PP   HR +SA  T   H V
Sbjct: 272 QPG-HGS----PPVKQHRSSSASTTCSGHTV 297


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 217,435
Number of Sequences: 438
Number of extensions: 4975
Number of successful extensions: 14
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22657590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)